Gordonia polyisoprenivorans: GPOL_c39870
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Entry
GPOL_c39870 CDS
T01719
Name
(GenBank) putative DNA repair helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GPOL_c39870
09124 Replication and repair
03420 Nucleotide excision repair
GPOL_c39870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpo03021
]
GPOL_c39870
03400 DNA repair and recombination proteins [BR:
gpo03400
]
GPOL_c39870
Enzymes [BR:
gpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GPOL_c39870
Transcription machinery [BR:
gpo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GPOL_c39870
DNA repair and recombination proteins [BR:
gpo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GPOL_c39870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
DUF7108
Motif
Other DBs
NCBI-ProteinID:
AFA74998
UniProt:
H6MR94
LinkDB
All DBs
Position
4544896..4546563
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AA seq
555 aa
AA seq
DB search
MTDGPLIVQSDKTLLLEVDHPDAASARAAIAPFAELERAPEHVHTYRVTPLALWNARAAG
HDAEQVVDALVTYSRYAVPQPLLMDIVDTMGRFGRLQLVKSPVHGLTLVSLDRAVLEEIL
RNKKVAPMLGARIDDDTVVVHPSERGRLKQILLKVGWPAEDLAGYVDGEAHPIGLDQGDW
HLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKRE
LVARTTLTEDEIGEYSGERKEIRPVTIATYQVMTRKSKGEYKNLDLFDSRDWGLIIYDEV
HLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAP
AECIEVRVTLTDEERLQYAVAENEAKYKLCSTAHTKVNVVRSILARHRDSQTLVIGAYID
QLEELGRELDAPVIQGSTKNKEREALFDRFRSGELQTLVVSKVANFSIDLPEASVAVQVS
GTFGSRQEEAQRLGRLLRPKSDGGQAHFYSVVSRDTLDADYAAHRQRFLAEQGYAYRITD
ADDLLGPTIGEESAG
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatggacccctgatcgtgcaatccgacaagacgctgctgctcgaggtcgatcac
cccgacgcggcgtccgctcgcgcagcgatcgccccgtttgccgagctcgaacgcgcaccc
gaacacgtgcacacctaccgggtgaccccgctggcgctgtggaacgcgcgcgcggcgggc
cacgacgccgagcaggtggtcgacgcgctggtcacctactcgcgctacgcggtgccgcag
ccgctgctgatggacatcgtcgacaccatgggtcggttcggccgcctccagctggtcaag
agtcccgtccacggactgacgctggtgagcctcgaccgcgcggtgctcgaggagatcctc
cgcaacaagaaggtcgccccgatgctcggcgcccgcatcgacgacgacaccgtcgtcgtg
cacccgtccgagcgaggacgactcaagcagatcctgctcaaggtcggctggccggccgag
gacctcgcgggttacgtcgacggcgaggcgcacccgatcggcctcgaccagggcgactgg
catctgcgcgactaccaggagatggccgccgactcgttctgggcgggcggctcgggcgtc
gtggtgctgccgtgcggtgcgggcaagacgatggtcggcgcggccgcgatggccaaggcc
ggtgccaccacactgatcctggtcaccaacaccgtggcgggccgccagtggaagcgggaa
ctggtcgcccgcaccaccctgaccgaggacgagatcggtgaatattcgggcgagcgcaag
gagattcgcccggtcaccatcgccacctatcaggtgatgacgcgaaagtccaagggcgag
tacaagaacctcgatctcttcgactcccgcgattggggcctgatcatctacgacgaggtg
cacctgctcccggcgccggtcttccggatgaccgccgacctgcagtcccgccgacgactc
ggcctcaccgcgaccctggtccgcgaggacggccgcgagggcgacgtgttctccctcatc
ggccccaagcgctacgacgcgccgtggaaggacatcgaggcccagggctggatcgcgccc
gccgagtgcatcgaggtgcgggtgacccttaccgacgaggaacgactgcagtacgccgtc
gccgagaacgaggcgaaatacaagctctgctcgacggcgcacaccaaggtcaacgtcgtg
cggtcgattctggcgcgccacagggattctcagactctggtcatcggcgcctacatcgac
cagctcgaggaactcggccgcgaactcgatgccccggtgatccagggatcgaccaagaac
aaggagcgtgaggccctgttcgaccgcttccggtccggcgagttgcagaccctcgtggtg
tccaaggtcgcgaacttctcgatcgatctgcccgaggcgtcggtggccgtgcaggtgtcg
ggcaccttcggttcccggcaggaagaagcgcagcgcctcggacgcctactgcgaccgaaa
tccgatggcggacaagcacacttctattcggtggtctcccgcgacaccctcgacgccgac
tacgccgcccaccggcagcgcttcctcgccgagcagggctacgcctaccggatcaccgac
gccgacgacctcctcgggcccaccatcggtgaagaatctgcgggctga
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