Gordonia polyisoprenivorans: GPOL_c42230
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Entry
GPOL_c42230 CDS
T01719
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gpo
Gordonia polyisoprenivorans
Pathway
gpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GPOL_c42230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpo03019
]
GPOL_c42230
03400 DNA repair and recombination proteins [BR:
gpo03400
]
GPOL_c42230
Enzymes [BR:
gpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GPOL_c42230
Messenger RNA biogenesis [BR:
gpo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GPOL_c42230
DNA repair and recombination proteins [BR:
gpo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GPOL_c42230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HTH_IclR
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AFA75227
UniProt:
H6MTZ6
LinkDB
All DBs
Position
4799568..4801682
Genome browser
AA seq
704 aa
AA seq
DB search
MSGTQTLNSPDLAAAQAVITSLAGPGAALRDDQLEAIAGLTTVAAARVLVVQATGWGKSA
VYWAATAILRQRRHGATLIVSPLLSLMRDQVSAAERAGLRAATLNSSNVSEWNEIEASLR
ADDLDVLLVSPERLANPGFGRRVLDAMAGRLGLLVIDEAHAISDWGHDFRPDYRRVADVL
RTLNPDTPVLATTATANERVTADVAAQLSAGGGAGTQTLVLRGSLARKSLHLNVIDGLSP
IQRYAWVAQHLPELPGSGIVYVLTVADADRLVGAIRAVHGDDLPVAAYTGQLDADRRHQL
EDALLRNDVKALVATSALGMGYDKPDLGFVVHVGSPPSPVSYYQQVGRAGRALDEAVVML
LASATDDAIWEHFATATIPDPKRMQVVLDALGEADEPLSVVALEAQTGVRRGRIELMLKQ
LAVDGATERGSDGWSVTGRPWSFDAAHYDGVLAVRRREADIMRDYISSRRCLMQLLTESL
DDPDAGACGRCSVCLGHLTEPLDDAVDPAVVRSVTVSLRRAAQVLEPRKMWPGGEVGRGR
IPAARLAEPGRVLAHADAPEWSELLAAARDHDAQALADLGDAAVATLSAWGRESGIRPDL
ICSLRLTGTTLATDLAAHLCAVGKRDGVAMPVQVGDGPPRDAPGAAEAAFWQARLGEPPA
GVAGRAVLLVVDESRSGWPITLAASALRDAGATAVLPLLIHRTV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcacccagacgctgaactcaccggatctcgcggccgcgcaagcggtcatcacc
agcctcgccgggccgggtgccgcgctgcgcgatgatcagctcgaggcgatcgcggggctg
accacggttgcggccgcgcgggtgctggtcgtgcaggccaccggatggggcaagtccgcg
gtgtactgggcggcgacggccattctgcggcagcgtcggcacggcgcgacgctgatcgtg
tcaccgctgttgtcgttgatgcgcgatcaggtgtcggcggccgagcgggccggcctgcgc
gcagcgacgctgaactcgtcgaatgtgtccgagtggaacgagatcgaggcgtcattgcgc
gccgacgatctcgatgtgctgttggtgtcaccggagcggctggccaatccggggttcggg
cgtcgcgtgctcgacgcgatggccgggcggctcggtctgctcgtcatcgacgaggcacat
gcgatctcggactgggggcacgatttccggccggactatcggcgcgtcgccgatgtcctg
cggacgctcaacccggacacgccggtgctggcgaccacggccaccgccaacgagcgggtc
accgccgacgtcgcggcgcagttgagcgcaggtggtggcgccggtacacagaccttggtg
ttgcgcggatcgctggcacgaaagtcgctgcacctgaacgtgatcgatggcctctccccc
atccagcggtacgcgtgggtggcgcagcatctcccggagttgccggggtcggggatcgtc
tacgtcctcaccgtcgccgacgccgaccggcttgtcggcgcgatccgagcggtccatggt
gacgacctcccggtcgccgcctacaccgggcagctcgatgccgatcgacgccaccagctc
gaggatgcgttgctgcgcaacgacgtcaaggcactcgtggccacctcggcgctgggcatg
ggttacgacaaacccgacctcggcttcgtggtgcacgtgggatcgccgccctcaccggtc
tcctattaccagcaggtcggtcgcgccgggcgtgcgctcgacgaagccgtggtgatgctg
ctcgcctcggccaccgacgacgcgatctgggagcatttcgccaccgcgaccatccccgac
cccaagcgaatgcaggtggtcctcgacgcgctcggcgaggccgacgagccgctgagcgtc
gtcgcactcgaggcgcagacgggtgtgcggcggggccgaatcgagttgatgctcaagcaa
ctcgccgtcgacggcgccaccgaacgcggctccgacggctggtcggtgaccggccggccg
tggtccttcgacgccgcacactacgacggcgtgctcgcggtgcgccgccgcgaggccgac
atcatgcgcgactacatctcctcacgccgctgcctgatgcagttgctcaccgagtcgctc
gacgacccggatgccggggcgtgcggccgttgttcggtatgtctcggccatctcaccgag
ccactcgacgacgccgtcgacccggcggtggtgcgctcggtgacggtctcgctacggcgg
gccgcgcaggttctcgagccccgcaagatgtggccgggcggtgaggtcgggcgcggccgg
attcccgccgcgcgtctggccgaacccggtcgggtactcgcgcacgccgacgcaccggag
tggtcggagttgcttgccgccgcacgcgatcacgatgcgcaggcgctcgccgacctcggt
gatgcggcggtggcgacactgtcggcgtggggccgcgagtccggtatccggccggatctc
atctgttcgctgcgtctgaccggcaccaccctggccaccgatctcgccgcgcacctgtgt
gcggtcggcaaacgtgacggcgttgcgatgcccgtgcaggtcggagacgggccaccccgg
gatgcgcccggtgccgccgaggccgcgttctggcaggcccggctcggcgagccgccggcc
ggggtggcgggtcgtgcggtgctgctggtcgtcgacgagtcccggtcgggttggccgatc
acattggccgcgagcgctttacgcgatgcgggcgcgaccgcggtgctgcccctgctgatc
catcggacggtgtga
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