Gordonia polyisoprenivorans: GPOL_c45980
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Entry
GPOL_c45980 CDS
T01719
Name
(GenBank) RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
KO
K03090
RNA polymerase sigma-B factor
Organism
gpo
Gordonia polyisoprenivorans
Brite
KEGG Orthology (KO) [BR:
gpo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpo03021
]
GPOL_c45980
Transcription machinery [BR:
gpo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GPOL_c45980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r4_2
HTH_23
Sigma70_ECF
HTH_3
KORA
HTH_24
HTH_Crp_2
DUF7343
HTH_38
HTH_28
GerE
MarR
HTH_31
UPF0122
DUF1800
HTH_AraC
DUF6831
Motif
Other DBs
NCBI-ProteinID:
AFA75599
UniProt:
H6MYG6
LinkDB
All DBs
Position
complement(5198906..5199706)
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AA seq
266 aa
AA seq
DB search
MSPSTQGQDRRDDEYADVIPMLAEMRAESDADHRSVLRDRVIERCLPLAEHVARRFADRG
EAFDDLVQVARIGLVNAVDRFDVERGANFLSFAVPTVMGEVRRHFRDGTWSMRVPRRSKE
ISLRIGRAADELVQRLGRSPRPSELAEFLDLSVDEVIDGLMARSAYNSISIDAEADEQRQ
SIGDTLGDDDEHLAAVEDYVTLAPAMARLPERERNILSLRFFRGMSQSEIAAEVGISQMH
VSRLLSRTLRALREELTDPEDAPSAG
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgccgtctacgcaaggacaggatcgccgtgatgacgagtacgccgacgtcatcccg
atgctggcggagatgcgggccgaatccgacgccgaccatcgttcggttctgcgggatcgg
gtgatcgagcgctgcctgccgctggccgagcatgtggcccgccgtttcgccgaccgtggg
gaggccttcgacgatctcgtccaggtcgcccggatcgggttggtgaacgcggtggatcgc
ttcgacgtcgagcgcggcgcgaatttcctgtcgttcgccgtgccgaccgtgatgggtgag
gtccggcgccatttccgtgacggcacgtggagtatgcgcgtgccgcgtcgcagcaaggag
atctcactgcggatcggccgggccgccgacgaactggtgcaacgcctcgggcgttcgccg
cgacccagcgaactcgccgaattcctcgacctctccgtcgacgaggtcatcgacggtctg
atggcccggtcggcctacaactccatctccatcgatgccgaggccgacgagcagcggcag
tcgatcggcgacacgctcggcgacgacgacgaacacctcgctgcggtggaggattacgtc
acgctggccccggcgatggcccgactccccgagcgtgaacgaaacatcctgtcgctgcgc
ttctttcgtgggatgtcgcagagcgagatcgccgcggaggtcggcatctcgcagatgcac
gtgtcgcggctgctctcccggaccctgcgggccctgcgggaggagctgaccgatcccgag
gacgctccttccgccgggtga
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