Glutamicibacter protophormiae: JQN66_05595
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Entry
JQN66_05595 CDS
T07442
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gpr
Glutamicibacter protophormiae
Pathway
gpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQN66_05595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpr03019
]
JQN66_05595
Messenger RNA biogenesis [BR:
gpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JQN66_05595
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF1833
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
QRQ79692
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Position
1178349..1180055
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AA seq
568 aa
AA seq
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MTESSVGKADSARMQKPAKVKKGTMRIVPLGGLGEVGRNMTVFELNGKLLIVDCGVLFPE
EHQPGVDLILPDFSYIKDRLDDVVGLVLTHGHEDHIGAVPYLLRLREDIPLYGSKLTLAF
VEAKLAEHRIKANTNIVVEGEIAQVGNFECEFVAVNHSIPDALAVFLRTEAGTVLHTGDF
KMDQLPLDGRITDLRHFARLGEEGVDLFLPDSTNAEVPGFTVAEREIGPVLEAKFARARR
RIIVASFSSHVHRVQQVLDAAAMHGRKVAFIGRSMVRNMGIAERLGYLDIPQGVLVDLKQ
IDQLPDHKVVLMSTGSQGEPMAALSRMANGEHKVQINPGDTVILASSLIPGNENSVFRVI
NGLMRLGAEVIHKGMAKVHVSGHASAGELLYCYNILRPKNVLPVHGETRHLIANGRLAAQ
SGVPEENVLLAEDGSVIDLKDGVAQLVGQVECGYVYVDGSKVGTITDDDLKDRVTLGEEG
FISVITVINRQNGTIISGPDIHARGVAEEDSVFNEIKPKIAAAIVEAVANNPNHSTHQLQ
QITRRVIGSWVSRKLRRRPMIVPVVLEA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagagttcagtaggaaaggccgattctgcacgcatgcagaagccggccaaagtg
aagaaggggacgatgcgcatcgtccccctcggaggcttgggcgaagtaggccgaaacatg
accgtgttcgagctcaacggcaagctgttgatcgtggactgcggtgtgctcttccccgag
gagcaccagcctggtgtggatctgatcctgccggacttctcatacatcaaggatcgcctg
gacgacgtggtgggcctcgtgctcacccacggccacgaggaccacatcggcgccgtgccg
tacctgctgcgccttcgcgaagacatcccgctgtacgggtccaagctgaccctggccttc
gtcgaagccaagctggccgagcaccgcatcaaggccaacaccaacatcgtggtggagggc
gaaatcgcccaggtcggaaacttcgaatgcgaattcgtcgcggtcaaccactcgatcccg
gatgccctggcggtcttcctgcgcaccgaggccggcaccgtgctgcacaccggcgacttc
aagatggaccagctgccgctggacgggcgcatcaccgacctgcgccacttcgcccgcctg
ggcgaggaaggcgtggacctgttcctgccggactccaccaacgccgaggtgccgggcttc
accgtcgccgaacgcgaaatcggtccggtgctggaagccaagttcgcccgcgcccgccgc
cgcatcatcgtcgcttccttctcctcgcacgtgcaccgcgtgcagcaggtgctggatgcc
gccgccatgcacggccgcaaggtcgccttcatcggccgctcgatggtgcgcaacatgggt
atcgccgagcgcctgggctacctggacatcccgcagggcgtgctggtcgacctgaagcag
atcgaccagctgccggaccacaaggtcgtgctgatgtccaccggttcccagggcgaaccg
atggccgcgctctcgcgcatggccaacggcgagcacaaggtgcagatcaacccgggcgac
accgtgatcctggcgtccagcctgatcccgggcaacgagaactcggtcttccgcgtgatc
aacggcctgatgcggctgggtgcagaggtcatccacaagggcatggccaaggtccacgtc
tcgggccacgcttcggccggtgagctgctgtactgctacaacatcctgcgcccgaagaac
gtgctgccggtgcacggcgaaacccgccacctgattgccaacggccgcctggccgcgcag
tccggcgtgccggaggaaaacgtgctgctggccgaggacggctcggtcatcgacctcaag
gacggcgtggcccagctcgtcggccaggtcgaatgcggctacgtctacgtggacggctcc
aaggtcggcaccattacggatgacgacctgaaggaccgcgtcaccctcggcgaggaaggc
ttcatctcggtcatcaccgtgatcaaccgccagaacggcaccatcatctccggcccggac
atccacgcccgcggcgtggccgaagaggactcggtcttcaacgagatcaagccgaagatc
gccgccgcgatcgtggaagcggttgcgaacaacccgaaccattccacgcaccagctgcag
cagattacccgccgcgtcatcggctcgtgggtgtcgcgcaagctgcgccgccgcccgatg
atcgtcccggtagtgctcgaagcctag
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