Paraglaciecola psychrophila: C427_0161
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Entry
C427_0161 CDS
T02535
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C427_0161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gps03019
]
C427_0161
Enzymes [BR:
gps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C427_0161
Messenger RNA biogenesis [BR:
gps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C427_0161
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
DUF2924
Motif
Other DBs
NCBI-ProteinID:
AGH42271
UniProt:
K7AAV1
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All DBs
Position
148239..149501
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AA seq
420 aa
AA seq
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MPTTHLTDTKFSDLPIHQQVVDALSEANFNLCTPIQALSLPPLLEGNDLAGQAQTGTGKT
IAFLVATFHYLLTNPQDSKRQPRAIIMAPTRELAVQIFNDAELLSQHTGLTLGLIYGGEG
YQSQREKLQGGVDIIIGTTGRIIDYYKQNIFSLAAIQVAVLDEADRMFDLGFIKDIRYLF
NRMPKPTERLSMLFSATLSYRVQELAYDHMDNPTHVQIEPERKTAERVKEELFYPSDEDK
PYLLLTLMEEEWPDKAIVFANTKHGCERIADWLEADKHRVGLLSGDVPQNKRLKILENFT
SGVLDVLVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGESGSSISFACEK
YALNLPAIEEYVQHSIPVTDYNPNDLMRDVTPPKPRFKKRMQSGKSHQKRPSGPRPNRNR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgccaactacacatttaaccgatacaaaattttcagatttacccattcatcagcaagtt
gtagatgcgctgtctgaggctaatttcaacctttgcacacctattcaggcattgagttta
ccgcccttgcttgaaggcaatgatcttgccggtcaagcgcaaacaggaacaggtaaaacc
attgcatttttggttgccactttccattatttgttgactaacccccaagactcaaaacgt
caacctagggcaatcattatggcgcccacccgtgaattagctgtgcaaatctttaatgat
gcagaattacttagccaacacacaggtttgacccttggtttaatttatgggggcgaaggt
taccaaagtcaacgggagaaactgcaaggtggtgtagatattataatcggcaccacgggt
cgtattatcgattactacaaacaaaatatcttttcattagccgcaattcaagttgcggta
ttagacgaagccgaccgtatgtttgaccttggttttatcaaagatattcgttatttattt
aatagaatgcccaagccgactgagcgtttgagtatgcttttttctgctaccttgtcttac
cgtgttcaagagttggcatacgatcacatggataatccaacccatgttcagattgagcca
gaaagaaaaaccgctgaacgcgtaaaagaagagctattttatccgtcagacgaggacaaa
ccttatctcttactgactttgatggaagaagaatggccagacaaagctattgtgtttgcc
aacaccaaacacggctgtgaaagaatagctgattggttagaagcggacaaacatcgagtc
ggtttgttaagtggtgatgtgcctcagaataaacgcttaaaaatacttgaaaactttact
agcggtgtgcttgatgttttagtcgctacggacgtagcagcacgtggtctacacattcct
atggtaagtcatgtttttaattacgatttacctgatgatgcagaagattatgtacaccgt
ataggtagaacaggtcgtgctggtgaaagtggaagttctatcagttttgcttgtgaaaaa
tacgcactgaatttaccggcgattgaagaatatgtacaacactcaatcccagtgaccgat
tacaacccaaacgatttaatgcgtgacgtcaccccacccaaaccgcgttttaaaaaacgc
atgcaaagtggtaaaagtcaccaaaaacgtccttcaggcccacgccctaatcgaaataga
tga
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