Paraglaciecola psychrophila: C427_0376
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Entry
C427_0376 CDS
T02535
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C427_0376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gps03019
]
C427_0376
03009 Ribosome biogenesis [BR:
gps03009
]
C427_0376
Enzymes [BR:
gps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C427_0376
Messenger RNA biogenesis [BR:
gps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C427_0376
Ribosome biogenesis [BR:
gps03009
]
Prokaryotic type
rRNA helicases
C427_0376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
HEM4
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AGH42486
UniProt:
K7B004
LinkDB
All DBs
Position
complement(372700..374457)
Genome browser
AA seq
585 aa
AA seq
DB search
MTTTTSEITFRDLNLPEELLQALDKVGYEKPTPIQAECIPLIIGGHDLLGTAQTGTGKTA
AFALPMLANIDPDDKSTQLLVLTPTRELAIQVAEAFQVYASFLKKINVLPIYGGSSYDNQ
IRQLKRGTQVVVGTPGRVIDHIKKGTLKLDKLKFLVLDEADEMLRMGFIDDVEWILGHAP
KERQTALFSATMPDAIRKITKRYLNDPKSVKIESKVATASTIRQRYCQVAGHHKLEALTR
ILEVEVFDGVIIFVRTKTATMELAEKLSARGYAVEPLNGDIPQNSRERTVDRLKKGKIDI
LVATDVVARGLDVERVSHVINFDVPYDTESYVHRIGRTGRAGREGDAILFISHREKRMLF
SIERATRQTIDAMTIPSISQLNETRLSRFKSSVIEAIGDASIETLIPIVESIQAETEAAP
EVIMAALAKIAQGDEPLILRDSDRPDLNAAPPRNDRNDRNDRAPRDRGARPERGGERGGA
ERVKRERKSGPPSEGMQRYRIEVGHTHGAKPGNIVGAIANEANISSKNIGSIEIYDNFST
VDLPNDMPKATHDTLQKTRVAGRSLGMREWSELPPKKRGNPDNRD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaccacatctgaaataacatttagagatttaaatctacccgaagaactgctg
caagcattagacaaggtcggctatgaaaaacccacacctattcaagcagaatgtattcca
cttattattggaggccatgatttattaggcaccgcgcaaacaggtaccggtaaaaccgct
gcttttgccctgcctatgttggccaatattgatcctgatgataaaagcacccaattattg
gtattaactcctaccagagagttagccattcaagtagccgaagcctttcaggtttatgct
agctttcttaagaaaattaacgttttacctatttatggcggttcatcttacgataaccaa
attcgccagctgaaacgtggcacacaagttgttgtcggcacacctggccgtgtaatagat
cacattaaaaagggcaccctgaaacttgataaattgaagtttttggtactcgatgaagct
gatgaaatgttacgtatgggtttcattgatgatgtagagtggatattggggcatgctcca
aaagagcgtcaaactgcgttgttttcagcgactatgcctgatgctattcgtaaaataacg
aaacgttatttaaacgaccctaaatcagtcaaaatcgaatccaaagttgccacagcgagt
accattcgtcagcgttattgccaagtagcgggccatcacaaattagaagccctgacacgc
atattagaagtagaagtctttgatggtgtgattatcttcgtacgtactaaaacagccacc
atggaattggctgaaaaactttctgctagaggttatgcggttgaaccacttaacggtgat
attccacaaaactcacgtgaacgaaccgttgaccgtttgaagaaaggcaaaattgatatt
ctagttgctacagatgtggtagctcgtggtcttgatgttgaacgtgttagccatgtaatc
aactttgacgttccttacgataccgaatcatatgttcaccgtattggccgtactggtcgc
gctggtcgtgaaggtgatgcaatattatttatttcacaccgtgaaaaacgtatgttgttt
tctatcgaacgcgccactaggcagacaatcgatgcaatgactatcccgtcaatctcacaa
cttaatgaaacacgtttatctcgtttcaaaagcagtgtgattgaagccataggtgatgca
tcaattgagacacttatccctatcgttgaatcaattcaagcggagactgaagctgcgcca
gaagtgatcatggccgcattagccaaaatcgctcaaggtgatgagccacttatccttaga
gacagtgaccgtccagatttaaatgctgcgcctccaagaaatgatcgtaacgatagaaat
gaccgagcgccaagagatcgcggtgctcgtcctgaacgtggtggtgagcgtggtggtgct
gagcgtgttaaacgcgaacgcaaatctggaccacctagtgaaggaatgcagcgttatcgt
atagaagtaggtcatactcatggtgctaaaccaggcaacatagtgggcgctatcgctaac
gaagccaacatcagtagtaaaaatatcggctctatcgaaatctacgataatttcagcact
gtagatttgcctaatgatatgcccaaagcaactcacgataccttacaaaagacacgtgtt
gcaggccgaagcttaggtatgcgtgaatggtctgaactaccaccaaagaaacgtggtaat
ccagataatcgcgactaa
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