Paraglaciecola psychrophila: C427_0416
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Entry
C427_0416 CDS
T02535
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
gps
Paraglaciecola psychrophila
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gps03016
]
C427_0416
Enzymes [BR:
gps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
C427_0416
Transfer RNA biogenesis [BR:
gps03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
C427_0416
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Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AGH42526
UniProt:
K6ZW73
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All DBs
Position
complement(405863..406402)
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AA seq
179 aa
AA seq
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MRAFFGLSPDVNTKLAIQAWRNKAFPHFNAPVPAANFHVTLAFLGQVSPKQLDALCEAVE
HISEIHTFDISLNQVGYWSKPKALWLGCKETQKEHLQLVKNLSQIANSIGLQLPKQDYIA
HLTLARKCSVNPPAALIEPAFTWRNAEFHLYESVSGNKGVSYHIRHTWPLAKLFAFRTV
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcattttttggtttatcacccgacgttaacactaagttagcgatacaggcttgg
cgtaataaagccttccctcactttaatgcaccagtacctgctgctaattttcatgtcacg
ttagcatttttaggccaggtttcccctaaacagcttgacgcattatgtgaggccgtcgag
catatttctgagatacacacttttgatatttcgcttaaccaagtaggttattggtcaaaa
ccaaaagccctttggttgggctgcaaagaaactcaaaaagaacatctacaacttgtaaag
aatctgtctcaaatagctaattcaataggtttgcaactacctaaacaagattatattgca
caccttactcttgccagaaagtgctcggtgaacccaccagcagctttaatcgaaccagca
tttacctggcgaaacgcggagtttcatctatacgaatcagtatcaggtaacaaaggcgtg
tcttatcatattaggcatacatggccattggctaaattgtttgcctttagaacagtctga
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