Paraglaciecola psychrophila: C427_0857
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Entry
C427_0857 CDS
T02535
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03410
Base excision repair
gps03430
Mismatch repair
gps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C427_0857
03430 Mismatch repair
C427_0857
03440 Homologous recombination
C427_0857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gps03400
]
C427_0857
DNA repair and recombination proteins [BR:
gps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C427_0857
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C427_0857
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C427_0857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AGH42966
UniProt:
K7AED0
LinkDB
All DBs
Position
792389..794083
Genome browser
AA seq
564 aa
AA seq
DB search
MNSQHLPELLHPRLKQIYADRGVEDAAQLNRSAQALLHYDQLQGVEKAVHLLSQAIATNK
KIIIVGDFDADGATSTALSMMSLRMMGSTNHDYLVPNRFNFGYGLSPEIVEVAAQQQAEV
IMTVDNGIACFAGVEKAKSLGITVIVTDHHLAAESLPIADAIVNPNQPGCGFLSKNLAGV
GVAFYLMLALRAELKSNGWLEQQGLPVPNLASLLDLVALGTVADVVPLDDNNRILVHQGL
QRIRSDKCRPGIQAIIEVASKEKSRLVASDLGFVVGPRLNAAGRLDDMSLGIECLMTDDP
ARARQIAVQLDSLNRERREIEGSMQQEAVKALEGLNLEASTLPFGLVLYQADYHQGVIGI
LAGRIKDKYYRPTIAFAHQDDDTLKGSARSIPGLHIRDLLEEINSRYPDIIGKFGGHAMA
AGLSLPLKNLSAFEQVFHQIAEENLKDKPLAGELISDGELQTEDFTLAFAQCLKDAGPWG
QGFPEPLFDGEFQLMEQRLVGSKHLKMMVKHESGVLIDAIAFNVDLDLWPNAQCSHVNLA
YKLDINEFRGRTSLQLMVEGVSAL
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgaatagccaacatcttcctgagttgttgcatccacgattaaaacaaatttatgctgat
agaggtgtcgaggacgcggcgcaactcaatcgtagtgctcaagcactattacattacgac
caattacaaggtgttgagaaagccgttcatttgttgtctcaagcgatagcaaccaataaa
aagataataattgtgggtgactttgatgccgatggtgccacaagcacagcattgagtatg
atgtctttgcgcatgatgggatcgactaaccatgattatttagtccctaacaggttcaat
tttggttatggcttaagtccagaaatagtagaagttgcggcgcaacaacaagcagaagtc
atcatgacagtcgacaatggcattgcgtgttttgctggtgttgaaaaagctaaatctttg
ggtataactgtgattgtaacagaccaccatttagccgctgaatcattaccgattgcggat
gcaatagtcaatcccaaccaaccaggttgtgggtttttgtctaaaaatttagccggggta
ggtgtagcattttatttgatgttagcccttcgagcagagctgaaatccaatggatggctt
gagcagcagggtttacctgtgcccaacttagcctcattactagatttggtggcacttggc
accgtagctgatgttgtgccattagacgataacaatagaatattggtgcaccaaggttta
cagcgtatacgtagcgacaaatgtcggccgggtatacaggcgataattgaagtggcaagt
aaagaaaaaagtcgtttagtagcctctgatttaggttttgttgtcggaccacgtctcaat
gctgccgggcggttagatgatatgtcgttgggtattgaatgtttgatgactgatgatccc
gcacgtgcaaggcaaatagccgtacagctggatagtttaaaccgtgagaggcgtgaaata
gaagggtcgatgcagcaagaagcggtaaaagctttggaggggttgaaccttgaagcaagt
actttacctttcggtttagtgttgtaccaagctgattatcatcaaggtgtgattggtatt
ttggccggccgtattaaagataaatattatcgtccaactatcgcttttgcgcatcaggat
gacgacactcttaaaggttctgctcgttctattccagggttacatattcgtgatttactc
gaagagataaacagccgatatccagatattattggcaagtttggaggccatgctatggca
gccggactcagtttaccattaaaaaatctatctgcttttgagcaagtttttcatcagata
gcggaagaaaatcttaaagataaaccactagcaggtgaattgatttctgatggtgagtta
cagaccgaagactttacgttagcttttgctcaatgtttaaaggacgctgggccttggggg
cagggatttccagagccactgtttgatggtgaattccaattaatggaacaacgcttagtg
ggcagtaaacacctaaaaatgatggttaaacatgaaagtggtgtgttaatcgatgctatt
gcttttaatgtcgatttggatttgtggcctaatgcacaatgcagccatgtgaatcttgct
tataagttagatatcaacgagtttcgtggccgaactagcttgcaattaatggtcgagggc
gtgagcgctttgtag
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