Paraglaciecola psychrophila: C427_2583
Help
Entry
C427_2583 CDS
T02535
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C427_2583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gps03019
]
C427_2583
Enzymes [BR:
gps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C427_2583
Messenger RNA biogenesis [BR:
gps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C427_2583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Fe-ADH
AAA_19
CMS1
ERCC3_RAD25_C
DUF5645
DUF5511
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGH44692
UniProt:
K6YWY8
LinkDB
All DBs
Position
complement(2434558..2435790)
Genome browser
AA seq
410 aa
AA seq
DB search
MSFSSLALDKSLTDAIKALGYEIPTPIQQQAIPAILDGKDIMAGAQTGTGKTAAFALPIL
QQLIKYADALRPIRALVLTPTRELAQQVYKNFVGYAENTQLKVAVAYGGVSINPQISALE
RGVDILIATPGRLLDLIAKGNVDLSQLQTIVFDEADRMLDMGFKDEIDQILSRLPNKRQT
LLFSATFDDAIFKLSKTLLNNPVLIEVSERNTAAAQVEQLVYTVDNDRKRELTSFLIGSK
NWHQVLIFTRTKQMADDLAKEMCKDGIQTQSIHGDKSQGARERVLAEFKQGKTRALVATD
VAARGIDIIDLKYVINYELPYVAEDYIHRIGRTGRAGNAGLAISLMSPNEEWLLEAVEKV
LDSVLLQQWLPGYEPDLTKQNQPAKRSSKGKQKQHARNKALGHKSPKKRR
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcttcgttagcattagataagtccctaactgatgcaatcaaggcattagga
tacgagatcccaacaccgatacaacaacaagcaattcccgccatcctggatggtaaagat
attatggcaggcgcccaaacaggaaccggaaaaacggctgcttttgctttacccatcctg
caacaacttattaaatacgctgatgctctgaggccaatccgtgcactagtgctaacaccc
acaagagaacttgcgcagcaggtgtataaaaattttgtgggttatgccgaaaatactcaa
ttaaaggttgcagtagcgtatggcggtgtcagtattaatccacaaatatctgcacttgag
agaggcgtagatatattgatcgcaacacctggacgattgttggatcttattgcgaaggga
aatgtcgatttaagccagcttcagaccattgtatttgatgaagccgatcgcatgttagac
atggggtttaaagatgaaattgaccaaatcctaagtcgactaccaaacaaacgacagacc
ttattgttctctgcaacttttgatgacgctatatttaaattaagtaaaaccttacttaat
aaccctgtactcatcgaagtcagtgagcgcaatacagcagccgcacaagtagaacaactg
gtatatacagttgacaatgatcgcaaacgagagctcacatcttttcttatcggctcaaaa
aactggcatcaagtcttaatttttactcgtactaaacaaatggcggatgacctagccaaa
gaaatgtgtaaagacggtattcaaacccaatctattcacggtgataaatcacaaggagcc
agagaaagagtattagcagaatttaaacagggtaaaaccagagccttagtggcaacagat
gtagcagcacgaggaattgatatcattgatttgaaatacgtgatcaattacgagttaccc
tatgttgccgaagattatattcaccgcattggcaggactggtcgagccggaaatgccgga
ttagccatttcgctgatgagcccaaatgaagaatggttactagaggccgttgaaaaagta
ctcgacagtgtattgttacaacaatggctaccaggttatgaacctgacttgactaaacaa
aaccaaccagccaaaagaagcagtaaaggtaaacaaaaacaacacgctagaaacaaagca
cttggccacaagtcacctaaaaaacgtaggtaa
DBGET
integrated database retrieval system
