Paraglaciecola psychrophila: C427_2702
Help
Entry
C427_2702 CDS
T02535
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C427_2702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gps03021
]
C427_2702
03019 Messenger RNA biogenesis [BR:
gps03019
]
C427_2702
Transcription machinery [BR:
gps03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C427_2702
Messenger RNA biogenesis [BR:
gps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C427_2702
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
AAA
Rad17
ABC_tran
AAA_19
AAA_22
AAA_16
AAA_25
AAA_23
Spore_III_AA
ATPase_2
ResIII
NACHT
AAA_24
AAA_30
Viral_helicase1
AAA_18
AAA_5
RNA_helicase
AAA_17
nSTAND3
nSTAND_NTPase5
NB-ARC
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AGH44811
UniProt:
K7A5R2
LinkDB
All DBs
Position
complement(2549673..2550638)
Genome browser
AA seq
321 aa
AA seq
DB search
MTRKILSLKVKRNEEPKQVNKVAKDLKHDDPQKRFLNGVAVNPTQCIHLELGSEEFTTRA
MDLITPIGMGQRGLIVAPPGCGKTTILKHICQAVGKAYPEIKLYALLIDERPEEVTDFKR
SVPAEVHASSTDSSYEQHVRVANQLLNSARKQAGEGHDVMIVIDSLTRLSRVHNASRKSS
GRTMSGGLDSRALEVPRKLFGSARKIENGGSLTILATILVDTGSQMDQVIFEEFKGTGNM
EIVLSRSIADQRIFPALEIAKSSTRREELLLDPKDIEKVRVLRRALSHLKPLEGARKLAE
LLEKYPTNAELLNCFIPKPEL
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaaaatattatctttgaaagttaaaagaaatgaagaacctaaacaagttaat
aaagtggccaaagatttaaaacacgatgatccacaaaaacgttttttaaatggcgtagcc
gtcaatccaactcaatgtattcacctagaattaggctctgaagaattcactacccgagcg
atggatttgatcacgccgataggaatgggtcaacgaggtttaattgttgctccaccgggc
tgcggaaaaaccaccattttaaagcatatttgtcaggcggtaggaaaagcctatcccgaa
ataaagctttatgccttacttatagatgaacgcccagaagaagtgactgattttaagcgt
agtgtgccagcggaagttcacgcctcatctactgattcaagctatgagcaacatgtacgc
gtagcgaatcaactgcttaactccgctcgcaagcaagcaggcgaaggtcatgacgttatg
attgtcatcgattctcttacaaggctctctcgagtgcataatgcaagtagaaagagcagc
ggtcgaacaatgtccggcgggcttgactctagagccttagaagtaccaagaaaactgttt
ggctctgctagaaagattgaaaatggtggctcactcactattttagcgaccatactggtt
gatactggaagccagatggatcaggtgatatttgaagaattcaaaggcactgggaacatg
gaaatcgttttatcacggagtattgcagatcagcgaattttccctgctctagaaattgcc
aaaagtagtacccgccgtgaagagctgcttttagatccgaaagatatcgaaaaagtcaga
gttttgcgtagggcactttcccatctaaaacctttagaaggcgctaggaaattggctgag
ttacttgagaaatatccaacaaatgcagagctattaaactgttttataccaaaacccgaa
ctataa
DBGET
integrated database retrieval system
