Paraglaciecola psychrophila: C427_4088
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Entry
C427_4088 CDS
T02535
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03030
DNA replication
gps03430
Mismatch repair
gps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C427_4088
03430 Mismatch repair
C427_4088
03440 Homologous recombination
C427_4088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gps03032
]
C427_4088
03400 DNA repair and recombination proteins [BR:
gps03400
]
C427_4088
Enzymes [BR:
gps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C427_4088
DNA replication proteins [BR:
gps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C427_4088
DNA repair and recombination proteins [BR:
gps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C427_4088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGH46193
UniProt:
K7AVT4
LinkDB
All DBs
Position
complement(3935489..3938974)
Genome browser
AA seq
1161 aa
AA seq
DB search
MTQQLQATPVNFVHLRVHSDYSMLDGLNKVKPLIAHVKELGMPAVAITDQMNMCGLVKFY
SQAHANGIKPIIGVDFWVQSDELVGTLFRLTLLAMDNKGYKNITLLVSKAYLRGSVKDRA
VIDKDWLVEHSQGVIIISGGKAGDLGMLLTKGNMDIAHNVTQFYQHHFPNRFYLELTRTG
RDGEEDYIHSAVNWAQQYDLPVVATNEVCFVDRQYFDAHEIRVAIHDGFTLNDPRRPKEY
SEQQYLRTSEEMSELFADIPEAVQNTVEIAKRCNVTVQLGTYFLPDFPTDGMDIKDFLVK
VSKEGLERRLAFLFPDEQVRLEKRPEYDERLDIELVVINQMGFPGYFLIVMEFIQWSKDN
NIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDRRDEV
IDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGMTLEKA
FLEEPRLPELYSQDEDVKELIDMCRILEGCTRNAGKHAGGVVIAPTLITDFAPLYCDDEG
KNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWATDMIKEGKGIDVDIAAIPLVDAKCFR
VLQNAETTAVFQLESRGMKELIKRLKPDSFEDIIALVALFRPGPLQSGMVENFIDRKHGR
EEVSYPDAEYQHECLKEILQPTYGIILYQEQVMQIAQVMSGYSLGGADLLRRAMGKKNLE
EMEKQRESFETGAKENGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHY
PAEFMAAVMSADMDNSDKIVTLVDECNRMGLTILPPDVNAGSRKFTVDEEGRVVYGIGAI
KGVGEGPIEAIIEAREETGKFSDLFDFCAKVDLKRINKRILEKLVLAGALDNLGPHRASL
MSSLPDALAAAGQHAKNKTSGQSDMFGLLTTETEQVQQAFAEVPHWPEKVWLDGEKTTLG
LYLTGHPINQYLSEIKHYAPCRLVDLKPTNRDQIAYAVGLVLGVRVMTNKRGRRWALVTL
DDKSARIDVRFFPDMLEQFEELLQADKILVISGQVSFDEFSGGNTISARDVMDLVQAREK
NAKGLQVHLESSWCNPSTLAKMQTILQPYQGGSCPVQIHYVHPDVKVDLTLGAQWYVSPQ
DELIYDLQQLLGKPQVDLEFH
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacaattacaagccacccccgtcaattttgtacatctacgtgtgcatagcgat
tactccatgttggatgggttaaacaaggttaaaccgcttatcgcccatgtcaaagaactg
ggtatgcctgccgttgctatcaccgaccaaatgaacatgtgtgggttggttaaattttat
agccaagctcatgctaacggtatcaaacctattattggcgtggatttttgggtgcaaagc
gacgagttagtaggcactttgtttcgtctaacgttattagctatggacaacaaaggctac
aaaaacattacactgttagtctccaaagcgtatttacgcggcagtgttaaagaccgggca
gttattgacaaagattggttagtagagcacagccaaggcgtgattataatatcagggggc
aaagcaggcgatttaggtatgttgctgactaagggcaatatggatattgcacataatgtg
actcaattctatcaacaccacttccctaaccggttttatttggaattaacccgcaccggt
agggacggagaagaagactatattcatagtgctgtaaattgggcgcagcaatatgatttg
cctgtggttgctacaaacgaagtctgttttgtggatagacaatattttgatgcccacgaa
attcgtgtggctatccatgatggtttcactttaaacgatcctcgcagacctaaggaatac
tccgaacagcaatatttacgtacctctgaagaaatgtcagagctatttgctgatattcca
gaagccgttcaaaatacagtagaaattgccaaacgttgtaatgtcacagttcaacttggc
acctactttttgcctgatttcccgactgatggaatggatatcaaagactttttagtcaag
gtctccaaagaaggtcttgaaagacgtctggcatttttgtttcctgatgagcaagtgcgt
ttagaaaaacgccctgagtatgatgaacgcttagacattgaacttgtggttatcaaccaa
atgggttttcccggttatttcttgatcgtgatggagtttattcaatggagtaaggacaat
aatattcctgttggccccggtcgagggtcaggtgctggctcattagtggcatatgcactg
gatatcaccgacctcgatccacttgaatatgacttgttattcgaacgtttcttaaaccct
gaacgggtatctatgcctgatttcgatgtcgatttttgtatggacagacgtgatgaggta
attgatcacgtggccgaaatgtatggccgcgatgccgtatcacaaatcattactttcggt
actatggcggcaaaagccgtagtgcgcgatgtgggccgtgtgttggggcacccttatggt
tttgttgataggatctctaaacttatcccacccactccgggtatgacgttagaaaaagct
tttcttgaagagccgcgcttacctgagttatacagccaagacgaagatgtcaaagagctg
atcgacatgtgtcgtattctggaaggttgcacgcgtaacgcaggtaaacatgccggtggc
gtagtgattgcccccacattgattaccgattttgcaccactttactgtgatgatgaaggt
aaaaacccagttactcagttcgataaaaacgatgttgagactgcagggctggttaagttt
gatttcttgggattacgtaccctgaccattattcagtgggcgactgatatgatcaaagag
ggcaaaggcattgatgtcgatatcgctgccatccctctggtcgatgcaaaatgttttagg
gtactgcaaaatgcagaaaccacagcggtattccagcttgaatcccgtggtatgaaagag
ttgattaaacgccttaaaccagattcatttgaagatatcattgcacttgtggcactgttc
aggcctggtccattacaatccggcatggttgaaaactttatcgatcgtaagcatggccgt
gaagaagtttcttaccctgatgcagaatatcaacacgaatgtttaaaagaaatcttacaa
ccaacctacggcattatcctgtatcaagagcaggtcatgcagattgctcaggtcatgtcg
ggttatagcttgggtggcgcagatttattacgccgtgctatgggtaagaaaaacctagag
gaaatggagaaacagcgcgagtcattcgagactggagccaaagaaaacggcattgatcct
actctagcgattaaaatatttgacctagttgaaaagtttgctggatatggttttaacaaa
tcccactccgcagcttacgccttagtgtcttaccaaacgttatggcttaaaactcattat
cctgctgagtttatggctgctgttatgtcagcggatatggataactcagacaaaattgtg
accctggttgatgaatgtaaccgcatgggattgaccatattaccacccgatgttaatgcc
ggtagccgtaagtttacggtggatgaagaagggcgcgttgtttacggcataggtgcaata
aaaggcgtaggtgaaggccctatcgaagcgattatcgaagcgcgggaagagaccggaaaa
ttcagtgacttatttgatttttgtgccaaagtcgaccttaaacgcattaataagcgcatc
ttagaaaaattagtcttggcaggagcattagataatttaggcccgcatcgtgcgtcatta
atgtcttctttacccgacgcattggccgcagccggtcaacatgctaagaataaaacatcg
gggcaatcagatatgtttggtttgctgaccaccgagactgagcaagtacaacaagccttt
gctgaagtacctcattggccagaaaaagtctggttagatggtgagaaaactacgttagga
ctatatctaaccggtcatccaattaatcagtacctgagtgaaatcaaacattatgcgcct
tgtcgtttagttgacctaaagccaactaacagagaccaaatcgcgtacgctgtaggttta
gtcttgggtgttagggtgatgaccaataaacgtggtcgtcgttgggcactagtgacatta
gatgataaaagcgccagaattgatgttaggtttttccctgatatgcttgaacagttcgaa
gaattgctgcaagcagacaaaatattggtaataagtggacaggtcagctttgatgaattc
tctggtggcaatacaatatcagcacgtgacgttatggacttagtccaagcccgtgagaaa
aatgccaaaggtttgcaagtgcatttagaatcaagctggtgtaatccatcaactctagct
aaaatgcaaaccattttgcaaccttatcaaggtggcagttgtccggttcagatacattat
gtacatccagacgtaaaagtagatttaaccttgggcgcgcagtggtatgtttctccccaa
gatgagttaatatatgacttacaacagctattgggtaaacctcaggttgacttggaattt
cactaa
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