Paraglaciecola psychrophila: C427_5258
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Entry
C427_5258 CDS
T02535
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03420
Nucleotide excision repair
gps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C427_5258
03430 Mismatch repair
C427_5258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gps03400
]
C427_5258
Enzymes [BR:
gps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C427_5258
DNA repair and recombination proteins [BR:
gps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C427_5258
MMR (mismatch excision repair)
Other MMR factors
C427_5258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
OrfX-like
Periphilin_C
Motif
Other DBs
NCBI-ProteinID:
AGH47355
UniProt:
K6YUX6
LinkDB
All DBs
Position
5051094..5053262
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSRLLDQLNDKQRDAVAAPASDMLILAGAGSGKTRVLVHRIAWLMEVEGIAPYGILAV
TFTNKAAKEMRGRIEQLQGSALNSMWIGTFHGIAHRLLRAHHADVGLPQNFTILDSDDQY
RLVRRVLKSLNLDEKHWAPKHVQWYINGNKDEGLRPQHIETHGDATQQKMREIYQTYQQT
CDRAGLVDFAELLLRAHELWLNNPSVLEHYQKRFRTILVDEFQDTNNIQYAWLRILAAPS
NNMIIVGDDDQSIYGWRGANVENIQHFLRDFKGAKTIRLEQNYRSTGNILKAANAVIDNN
QGRLGKKLWTEDSPGELISLYAGFNELDEARFNIARIKEWRDNGNALSDCAILYRNNAQS
RVLEEALLQESIAYRIYGGLRFFERQEIRDALGYLRLINQTIDDAAFERIVNTPTRGLGD
KTLSQIRELARESELSMWDASSRILAENRLTGRASNALSSFTKLITQLTQDAAALPLEQH
ADYVIKHSGLFAMYKAEKGEKAQARIENLEELVTACKQFVVPEEADNMTPMSAFLAHASL
EAGDNQADKHQDAVQMMTIHTAKGLEFPLVFMAGVEEGMFPSQMSNEEPGKIEEERRLCY
VGMTRAMQKLYITYAENRRVYGQDKYHTPSRFIKEIPTDCIEEVRLRTTISRPVQNRFTP
VTGHTAFESTGFQLGERVSHPKFSEGTVLNYEGSGEHARVQINFDEFGSKWLVMSFAKLT
KV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggatgtatctcgacttcttgaccagttaaacgacaaacaacgtgatgcagtggccgct
cctgcatctgacatgcttatcttagcgggtgcaggcagcgggaaaacgcgagttttggtg
catcgtattgcatggttaatggaagttgagggcattgccccatacggtattttagcagta
acgtttaccaataaagccgccaaagaaatgcgcggtcgcatagagcagttgcaaggcagc
gctctgaatagcatgtggattggtacctttcatggcatcgcgcatcgtctgctacgggct
catcacgcagatgttggactacctcaaaacttcactattttagactcagatgatcaatat
cgattggttagacgcgtacttaaaagtcttaacctagacgaaaaacactgggctcccaaa
cacgtacagtggtatatcaacggcaataaagacgaagggttacgtcctcagcatatcgaa
acccatggtgatgccacgcaacaaaaaatgcgtgaaatttatcagacttaccaacagaca
tgcgatcgagccgggttagtcgattttgctgaattgttactcagagcccacgagctgtgg
ttaaacaatccttcagtattagaacactaccaaaaacgctttagaacgattctggtggac
gaatttcaagataccaataacattcaatatgcttggttgcggatacttgccgcccccagt
aacaatatgattattgttggtgatgatgatcaatcaatatatggttggcgtggcgcaaat
gtagaaaacatccaacattttttacgagactttaaaggtgcgaaaactatacgactggaa
caaaattatcgctctactgggaatatattaaaagcggccaatgctgtaattgataataac
caaggccgattaggcaaaaaattatggaccgaagatagcccgggagaactcatttctttg
tatgctgggtttaatgagttagatgaagctcgttttaacattgcacgcataaaagaatgg
cgagacaacggtaatgccttatctgattgtgcgattttatatcgcaataatgcacagtca
cgcgttttagaggaagcattgttgcaagagtctatcgcctaccggatatatggtggctta
cgattctttgaacgtcaggaaattcgggatgcacttggttatttacgcttaattaatcag
acgattgatgacgctgcctttgaacgaatcgtgaacacacccactcgtggccttggtgat
aaaaccctatcacaaattcgcgagcttgctcgcgagtcagaactatccatgtgggatgcc
agttccagaatactggctgaaaaccgcttaactggccgtgcatctaatgcccttagctcc
ttcacaaaattaattacgcaactcactcaagatgctgcagcacttcctttagagcaacat
gcagactacgtgattaaacattccggtttatttgccatgtacaaagcagaaaaaggcgaa
aaagctcaagctaggattgaaaacttagaagaactggtcaccgcctgtaaacaatttgtg
gtgccagaagaagcggacaacatgacacctatgtctgcttttttagcgcatgcgtctcta
gaggcaggagataaccaagcagataaacatcaagacgctgtgcaaatgatgactattcac
actgcaaaaggacttgagtttccactagtttttatggctggtgttgaagaaggcatgttc
ccaagtcagatgagtaacgaagagcctggtaaaattgaagaagaacgccgcctttgttat
gtaggcatgacacgggcaatgcaaaagttatatattacttacgccgaaaacagaagagta
tatggacaggacaagtatcacaccccgtcgcgtttcatcaaagagatccctaccgattgt
atcgaagaagtgcgtttgcggaccaccatatctcgaccggttcaaaatagatttactcca
gttacgggtcataccgctttcgaatcaacaggctttcaactaggggagagagtgtcccat
cctaaattttccgaaggcactgtattgaattatgagggcagtggcgaacatgcaagagta
cagattaacttcgatgagtttgggagtaaatggctggtcatgtcatttgcaaaattaaca
aaagtttaa
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