Paraglaciecola psychrophila: C427_5263
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Entry
C427_5263 CDS
T02535
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
gps
Paraglaciecola psychrophila
Pathway
gps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C427_5263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gps03019
]
C427_5263
03400 DNA repair and recombination proteins [BR:
gps03400
]
C427_5263
Enzymes [BR:
gps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C427_5263
Messenger RNA biogenesis [BR:
gps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C427_5263
DNA repair and recombination proteins [BR:
gps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C427_5263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
PB4_spike
Hanta_Gn-B
UvrA_inter
zf-CXXC
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AGH47360
UniProt:
K6YUX2
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All DBs
Position
5057966..5059783
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AA seq
605 aa
AA seq
DB search
MPDYPVQSSPAITQAQQVLKQTFGYDRFRDGQAQVITQVMQQKDVLVLMPTGGGKSLCYQ
IPAMLLPGLTIVVSPLISLMKDQVDALLTYGVNAAYINSTLSSQDMFNIYKGMQDDKYQL
IYVAPERLMQLDFIQRLQGLTISLIAVDEAHCVSHWGHDFRKDYRLLGQLKGTFPHIPIM
GLTATADLATRADITQQLNLQQPFIFKGSFDRPNIRYNQITKYKATEQAIAFIKQQDGSG
IIYCNSRRKVDDLSIALAKQGINCAGYHAGLEGAIRDKIQRDFIQDKIDIIVATVAFGMG
IDKSNVRFVLHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIRQWISTGENLE
RNSVELQKFAAMEAFGEAQTCRRQILLNYFAEYSAGHCGNCDICLDPPKAFDGTVEAQKV
LSCVFRLKQSVAGQYLIDVLRGKQLKRILEHGHDKLTTYAIGKDKSDAYWHNIINQLIHR
GFLRVDITQNAVLKLTEEARPILQQAQKLQLAVPRLSLDLGKKAQFIAPDYDRALFAKLK
YLRKTIAEQDDVPPFVVFSDATLADMADKFPESSFDFLDIHGVGQTKLERYGERFIAAIS
KHINK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
ttgccagattatccagtacagtcatctcctgcaattacccaagcgcaacaagtattaaag
cagacctttggctatgatcgttttcgtgatggacaagcacaagttataacccaagtgatg
caacaaaaagatgtgttggtactcatgcctactggtggcggtaagtctttgtgttatcaa
attccggctatgttgttacctggcttgacgattgttgtttcacctctcatatccttaatg
aaagatcaggtcgatgctcttttgacctatggggtcaatgccgcttatataaattcaacc
ttgtcctcacaagatatgttcaacatttataagggcatgcaagatgacaagtatcaatta
atatacgtagcgcctgaaaggcttatgcaactggattttattcagcgtttacaaggactt
acaattagtcttattgctgttgatgaggcgcactgcgtctctcattggggccatgacttt
agaaaggactacagactacttgggcaattaaaaggcaccttcccgcatatcccaattatg
ggtttaactgctacggctgaccttgctacccgtgcagatattacccagcagttgaattta
cagcaaccctttatctttaagggaagtttcgaccgtcctaatattcgctacaaccaaatc
acaaagtataaggccacagaacaagcgatcgcttttattaaacaacaagatggtagtggt
attatttattgtaatagtcgcaggaaagtagacgatctgagcattgctttggccaaacaa
gggatcaattgtgccggttatcatgcaggtcttgaaggtgcaattcgagataagattcag
cgtgattttatacaagataaaattgatattattgtggcaactgtggcatttggcatgggt
atagataagtccaatgtgcgctttgttttacattttgacttacccaggagtattgaatca
tattaccaagaaataggccgagcaggcagagacggtatgcccgccgaagccttgttacta
tttgatgaaaaagatgcagctcgtattcgtcaatggatatcaaccggtgaaaatctcgaa
agaaatagtgtagaactgcaaaagtttgcggctatggaagcgtttggtgaggcacaaacc
tgtcgccgacaaattttactcaattactttgctgaatattctgctgggcactgcggaaat
tgtgatatctgtctcgatcctcccaaagcctttgatggcaccgtagaggcgcaaaaagtt
ctgtcttgtgtatttcgactcaaacaatccgttgctgggcaatatttgattgatgtactc
aggggtaaacaactaaaacgcattctagaacacggtcatgataaattgacgacttatgct
atcggcaaagataaatctgatgcttattggcataatattattaatcaattgatccaccgt
ggttttcttagagtggatatcacccaaaatgcagtcttgaagcttacagaagaagcaagg
ccaatactgcaacaagcacaaaaactacagcttgcggtaccaagactgagtcttgattta
ggcaaaaaagcacaatttatcgcaccagattatgatcgagcgctatttgctaaacttaaa
tatttacgtaaaacgattgctgaacaggatgacgttccgccatttgttgtatttagcgat
gcaacattagccgacatggcagataaatttccagagtctagtttcgactttttggatatt
cacggtgtgggtcaaactaaactcgaacgttacggtgaacgttttatcgctgctatttcg
aagcacattaataagtaa
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