Gardnerella piotii: K9E43_01675
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Entry
K9E43_01675 CDS
T08320
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gpt
Gardnerella piotii
Pathway
gpt03030
DNA replication
gpt03430
Mismatch repair
gpt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K9E43_01675 (dnaE)
03430 Mismatch repair
K9E43_01675 (dnaE)
03440 Homologous recombination
K9E43_01675 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpt03032
]
K9E43_01675 (dnaE)
03400 DNA repair and recombination proteins [BR:
gpt03400
]
K9E43_01675 (dnaE)
Enzymes [BR:
gpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K9E43_01675 (dnaE)
DNA replication proteins [BR:
gpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K9E43_01675 (dnaE)
DNA repair and recombination proteins [BR:
gpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K9E43_01675 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
MCM10_OB
tRNA_anti_2
DUF5487
Motif
Other DBs
NCBI-ProteinID:
UQA81280
LinkDB
All DBs
Position
complement(416874..420434)
Genome browser
AA seq
1186 aa
AA seq
DB search
MTRPETNFVHLHNHTHYSLLDGASKIPDLVASAKELGMPAIAITDHGNMHGAYEMWSTAV
KAGIKPIIGIEAYVTPETARQDKSRVHWGTDAQRSDDVSGGGLITHMTMWAENDEGLTNL
LKASSIANLEGRVMRYPRMDKDVLSTYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGE
FQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAM
LCINSGSRLDDPNRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGED
GAFMPQFDCPKGWDETSLFLKKVEEGLERRYNNNVPMEVLKQADYECGVICQMQFCGYFL
VVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDI
DVDFDPEGRAKVLEYVGEKYGKDKVAQCVIYGTIKTKQALKDAARIMGYEFSVGEKITKI
LPPAKNGKDMSLHEIFDEKSKRYAEAREFREMYKDDPDTKLITEEAKGIEGLIRQTGVHA
CATIMGSEPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTIRNVE
NNRHTKIDYTKIPLDDKETYKLLARGDTLGVFQLDSDGMRALLRTLKPDNFNDISALIAL
YRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKDVLGETYGLIVYQEQVQSAARILA
GYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMQEHGYSKEAAQAVWDVLVPFSGYAFNK
AHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRILPPDVNE
SVLEYSAVGNVVRFGLGAIRNVGDKAVKDIIAERESSRGRFVNFKDFVKRVSFDALNRRL
VESLIKAGAFDSIDPNRRAIWEICGQAIDSVIPIKRRQLEGQFDLFSSIDKDNTDNLSLG
DAEINVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLSSLSDMSIAELIDKAKTMN
DRTKVTLAGLITGVDRRVSKQGNAWAIITLEDMESSIQCMFFSKAYEAAANDFAIDQVAQ
IRGEVEVRDETVSLRGKYFEIPSLESIDSRPLNIVLPNMSIDKSKLDKLSSILCEHPGCC
EVRLALIDSKGRAKVLAFGDRFRVKRDMSLFAELKILFGPACLPGA
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgactaggccagaaacaaactttgtacatttgcataaccacacgcattattcgcttttg
gatggtgcttcaaagataccagacctagtagcgagtgcaaaagaattgggtatgccagct
attgctattacagaccacggcaatatgcatggcgcgtacgagatgtggagcacggctgta
aaagctgggattaagccgattattggaatcgaagcttatgtgactccagaaacagccaga
caagacaaaagccgagttcattggggaacggacgcgcaaagaagcgacgatgtttctggc
ggtggtttgattactcacatgacaatgtgggccgaaaatgatgaaggcttaacaaatttg
cttaaagcatcgtctatagccaatttggaaggtcgcgttatgcgatatcctcgaatggat
aaagatgtgctttcaacgtattctaaaggtgttatagcgtcttctggatgtccgtctgga
attattcaaacgcgtcttcgtttgggtcaatttgatgaggctttacgcgctgcaggtgag
ttccaagatatttttggtcgagataatttctttattgagcttatgaatcacgggctttct
attgaaacacgcgttacaaaagatttgcttgagattgctaaaaagttgaatgctcctctt
cttgctactaacgacttgcactatgtgcacgaagaagatagagaagcgcaagatgcaatg
ctttgcattaattctggatctcgcttagatgatccaaatcgttttaagtttgacggttct
ggctattatttgaagtctgctgagcaaatgcgtgagctttttaaggagtttccagaagct
tgcgataatacgcttgagattgcgcgccgttgcaatgttatgtttgatgacggcgaagat
ggcgcttttatgccgcaatttgattgtcctaaagggtgggatgagacttcgctattcctt
aaaaaagttgaagagggtttggaacgcagatacaacaacaatgttccaatggaagtctta
aaacaagcagactacgagtgtggcgttatatgccaaatgcaattttgtggctacttttta
gttgttgcagactatattaattgggcaaaagagcacggggttatggttggccctggacga
ggaagcgctgcaggagcaatggtggcgtatgcaatgggcattacagagcttgacccaatg
aagcatggtttgatttttgaacgattcttaaacccagagcgcgtgtctttgccagatatt
gacgttgactttgatccagaaggtagagccaaagttttggaatacgttggcgaaaaatat
ggaaaagacaaagtagcgcaatgcgtgatttatggcacgattaaaactaagcaagctctt
aaagatgctgctcgaataatgggttatgagttttctgttggagaaaaaattacaaagatt
ttgcctcctgcaaaaaatggcaaagatatgagcttgcatgaaatttttgacgaaaagtca
aagagatacgcggaggctcgtgagttccgtgagatgtacaaggatgacccagatacaaag
ctaattacagaagaagcaaagggtattgaaggcttgattcgccaaacgggtgtgcatgct
tgtgcaacgattatgggttcggagcctattacagatacgtctcctcttttggagcgcact
gatggcacaattacaacaacttttgagtatcacacttgcgaaactcttggcctagttaag
atggattttttgggtctttctaacttaacggttattagggatactattcgaaatgttgag
aataatcgtcatacaaaaattgattatacgaaaatacctttagacgataaagaaacttac
aaacttcttgcaagaggagatactttaggagttttccagcttgattccgacggtatgcgt
gcgcttcttcgcactctaaaaccagataactttaacgatatttctgctttgattgcgctt
tataggccaggtcctatggatatggattcgcacaccaattatgctaagcgtaagaacggt
ttgcaaaagattacgcctattcaccccgaagttgcagagccgctaaaagatgttttaggc
gaaacttatggtttgattgtgtaccaagagcaggtgcaatctgctgcgcgtattttagca
gggtatagccttggcaaggcagatgttttgcgtagagctatgggtaaaaagaagccagaa
gtgttggctaaagagaaaatcccgttctttaaaggtatgcaagagcatgggtattctaaa
gaagctgctcaagctgtgtgggatgttttagttccattctctggttacgcgtttaataaa
gctcattctgctgcatacggtttgatttcatattggactgcttacttaaaaacgcattac
ccggttgaatttatggctgcgttactccaaaacgaacgtacgaataaagataagactgca
ctgtatttgggtgaagcaaggcgcatgggaattcgcattttacctcctgatgttaatgaa
tcagtattagagtattctgctgtaggcaatgttgtgcgattcggtcttggagcaattaga
aacgttggagataaagctgtaaaagatattattgctgaacgtgaatcttctagaggacgt
tttgtgaatttcaaagatttcgttaaaagagtttcttttgatgctcttaacagaaggctt
gttgaatctttgattaaagctggagctttcgattctattgatcctaataggcgtgctatt
tgggaaatttgtggacaagcgatagattccgtaatacctattaagcgtaggcaattggaa
ggtcagtttgatttattctctagtattgataaagataatacagataatctgtcgttaggc
gatgctgaaataaatgttcctgatgtagaagaatgggataaaaaaacaaagctaaacttt
gagcgtgagatgttaggactttatgtttctgatcatcctttgagcggtctttctgctgtt
ttaagtagcttgagtgatatgagtattgctgaattgattgataaagcaaaaactatgaat
gatcgcactaaagtgactttagctggtctgattactggtgtagatagacgtgtttctaaa
caaggtaatgcgtgggcaataatcacattggaagatatggaaagttccatacaatgtatg
tttttcagcaaagcatacgaagctgctgcaaatgattttgcgattgatcaagtagctcaa
attcgaggtgaagttgaggttcgcgatgaaacagtttctttgcgtggtaaatattttgaa
ataccttctttggaatctatagattcaagacctcttaatattgttcttcctaatatgagt
atcgataaatctaagttagacaagttgagttctatattatgtgagcatcctgggtgttgc
gaagtaagacttgctttgattgactctaaggggcgcgcaaaagtcttagcttttggagat
agatttagagttaagcgagatatgtcactttttgcagagctaaaaatattgtttggccca
gcttgtttgccaggcgcctaa
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