Gardnerella piotii: K9E43_02220
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Entry
K9E43_02220 CDS
T08320
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gpt
Gardnerella piotii
Pathway
gpt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gpt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K9E43_02220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gpt03021
]
K9E43_02220
03400 DNA repair and recombination proteins [BR:
gpt03400
]
K9E43_02220
Enzymes [BR:
gpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K9E43_02220
Transcription machinery [BR:
gpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K9E43_02220
DNA repair and recombination proteins [BR:
gpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K9E43_02220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Ac81
FadA
Motif
Other DBs
NCBI-ProteinID:
UQA81373
LinkDB
All DBs
Position
complement(573030..577049)
Genome browser
AA seq
1339 aa
AA seq
DB search
MLDVNAFDKLRIGLATAEDIRSWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQDEFDTEIGNLRKRRDNEIDARAKKAEED
LHELEESGEAKGSAKSKLRAGAEREMSAIRTRYDEQIQRLNAVFDRFKGLRAGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLKSAAVELREEIDNGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRG
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVIDGAKGQG
RIFSSLAEAQMALDKHEIDMQAKVLIRVPADFVLPKDWQPSELKVVDPEPGSPDVVREER
FKDGTVLFATSCGRVLFNSTLPEDYPFVNQQVPKGVLSKIVDDIATRYSTAQVAASLDAL
KDLGFTRAPWSGVTMAFSDIVLPPNREQIAQDYEDQAAKINSQYDMGLLTDEERRQELIN
LWTECTDKVADAMRENFHDDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQEVIVREEDCGTKRG
LVMKIADRDENGNLTLVKAADGGPYSRLLAADVLDPADSTTVLAKCGDALSMDVLRSLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATSRLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGVVKVEDTDHGRQVTLTPDDTT
VEPIVYPVTRRAPMLVKDGDHVEVGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHNVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTELLPGELVDQAKFREANLAAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALSQKEDDLKGLKENVIIGKLIPAGTG
LARYRNADVSADPEVRDAMYPNLAVTAENSTPSNFGESDMADVDFSNIDFGDMKLGDDFN
PDDYLDDQGGQSDYDDDIE
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgaggattggactggccactgccgaagacatc
cgtagctggagccacggcgaagttaagaagccagaaaccattaattaccgtacccttaag
ccagagaaggacggtctgttcggtgagcagatttttggtcctactcgcgattgggagtgt
gcgtgcggcaagtataagcgcgtacgctttaagggaatcgtgtgcgagcgatgcggcgtg
gaagttacacgcagccgcgttcgccgtgaacgcatgggtcatattgagcttgcggctcct
gtaacacacatttggttcttcaagggtgtgccaagccgcttgggatatttgctcgacatt
gctccaaaagacttggaaaaggtcatctactttgcagcctacatggttactaaggtagac
gaagagcagcgtcaccaggatcttccagacttgcaagacgagtttgatactgagattggc
aatcttcgcaagcgccgcgacaacgagattgatgcgcgtgcaaagaaagcagaagaagat
cttcacgagctagaagaatcgggcgaggcaaaaggtagcgcaaagtctaagttgcgtgct
ggagctgagcgcgaaatgtctgctatccgtactcgttacgacgagcaaattcagcgtttg
aacgcagttttcgatcgctttaagggcttgcgtgcaggagatatggaaggcgatgttgat
ctttggcgagagatggaagaccgctatggcgattactttgaaggatgcatgggcgcggaa
gcaatcaagaagcgcttgcaagacttcgatcttaagtctgctgctgtagaacttcgcgaa
gagatcgacaatggcactggtcagcgcaaggcgcgcgctttgaagcgacttaaggttgtg
aacgcgttcttgactactggaaacaagccagaagcaatggttttggatgttattccagta
atcccaccagacttgcgtccaatggttcagcttgatggtggccgctttgcaacatctgat
ttgaacgatttgtaccgtcgtgtaatcaaccgtaataatcgtttgaagaggttgattgag
cttggcgctcctgaaatcatgcttaataacgaaaagcgcatgcttcaggaagctgttgat
tcactcttcgacaacggtcgtcgtggccgcccagtaactggtgcatcgaaccgcccacta
aagtcgctttccgatatgcttaaaggtaagcagggtcgattccgccagaacttgctcggt
aagcgagttgattactctggccgttccgtaatcgttgttggtccaagccttcgcatgcat
caatgcggtttgcctaagccaatggcgttggagctgtttaagccattcgttattaagcgt
ttggtagatcagggctttgctcagaatatgaagagcgcaaagcgccttgtagatcgcgga
gattccgaggtttggggcgtgctcgaggaagttatttccgagcatcctgttcttcttaac
cgtgctcctacactccaccgtttgggtattcaagcatttgagccaattttggttgaaggt
aaggcaattcacttgccaccacttgcttgcgcagcattcaacgccgacttcgatggtgac
cagatggcagtgcatttgccactttccgccgaagctcaagcagaagctcgcagcttgatg
atggcatccgacaatatcttaaagccagcagatggtcacactgttacaatgccatctcag
gatatgattttgggcttgtactacttgtctaccgtaatcgacggtgcaaagggtcaaggc
cgaatcttctcttcgcttgcagaggcgcagatggcgctcgacaagcacgagattgacatg
caagctaaggtgttaatccgcgttcctgcagactttgttttgccaaaggattggcagcct
tctgagcttaaggttgtagacccagagccaggcagcccagatgttgtgcgtgaagagcgc
tttaaggatggaactgttctgtttgcaacgtcttgcggtcgcgtgctgtttaatagcact
cttccagaggattatccgtttgtaaaccagcaggttccaaagggtgttctttctaagatt
gttgacgacattgctacgcgctattccaccgctcaggttgccgcaagcctcgatgctttg
aaggatcttggctttacgcgcgcaccttggtcgggcgttacaatggcattctctgatatt
gtgcttcctccaaatcgcgagcagattgcgcaagattacgaggatcaggctgcaaagatc
aactcccagtacgatatgggtcttcttacagacgaagagcgtcgtcaagagttgattaac
ttgtggactgaatgcaccgataaggttgcagacgcaatgcgcgagaacttccacgacgac
aacaacgttaacattatggttcagtctggcgcgcgtggtaactggatgcagattcgtcag
attgctggtatgcgaggcttggtggcaaatcctaagggcgagattattcctcgtcctgtt
aagtcaaactaccgcgatggcctttccgtgttggagtacttcatctcgcagcacggtgct
cgtaagggcttggcagataccgcacttcgtacagcagaatctggttatttgactcgtcgt
cttgtggacgtttctcaggaagttattgttcgcgaagaagattgcggcacaaagcgtggt
cttgttatgaagattgcagaccgcgacgaaaatggcaatttgacgcttgttaaggctgct
gatggtggcccatactcgcgcttgctcgctgcagacgtgctcgatccagcagacagtaca
acagttttggcaaagtgtggagacgcgctttctatggacgttttgcgcagcttggttgct
cacggcgttgaagaggttaaggctcgctctgtgcttacttgcgaatctaagcgtggcgtt
tgcgcaaagtgctacggctggtctttggctacaagccgactcgtggatgttggcgaggct
gttggtattgttgcagcacagtccattggtgagcctggtacgcagcttacgcttcgttcc
ttccactctggtggcgttgcttctgcaagcgatattacgcagggtcttcctcgtgttacc
gagctttttgaggctcgtactcctaagggtgaggctccaatcgcagagttcccaggtgtt
gtgaaggtagaagatacggatcacggtcgtcaagtcactttgactccagacgatacaacc
gttgagccaatcgtttacccagtaactcgccgtgctccaatgcttgttaaggatggcgac
cacgttgaggttggcacgcagcttattgagggttctgtggatcctaagaagattttgcga
atccttggtccgcgtgcggctcaggtgaatattgtggaagaagttcacaatgtttaccgt
tctcagggcgttgatattcacgataagcacattgaggttattgttcaccagatgctccgc
cgtattacggtgattgattctggagacactgagcttcttccaggtgagcttgtggatcag
gcaaagttccgtgaggcaaatcttgctgctgttaagaatggcggtaagcctgctgctggt
cgaccagagcttatgggtattaccaaggcttctttggctacggattcttggctttctgcc
gcatccttccaggagactacacgcgtgcttactgaggctgctttgagccagaaggaagat
gatcttaagggtctaaaggagaacgtgattattggtaagctcattccagctggtactggt
ttggcgcgctaccgtaatgcggatgtgtctgcggatccagaagttcgtgacgctatgtat
ccaaatcttgctgtgactgctgaaaatagcactccatcaaactttggtgaaagcgacatg
gcggatgttgacttctccaacattgattttggagacatgaagctcggtgatgattttaat
ccagatgattatcttgacgatcaaggtggtcagagtgattacgatgatgacattgagtaa
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