Gardnerella piotii: K9E43_02650
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Entry
K9E43_02650 CDS
T08320
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
gpt
Gardnerella piotii
Brite
KEGG Orthology (KO) [BR:
gpt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gpt03032
]
K9E43_02650 (topA)
03400 DNA repair and recombination proteins [BR:
gpt03400
]
K9E43_02650 (topA)
Enzymes [BR:
gpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K9E43_02650 (topA)
DNA replication proteins [BR:
gpt03032
]
Prokaryotic type
DNA Topoisomerases
K9E43_02650 (topA)
DNA repair and recombination proteins [BR:
gpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K9E43_02650 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UQA81447
LinkDB
All DBs
Position
complement(704035..706920)
Genome browser
AA seq
961 aa
AA seq
DB search
MTEQNKLVIVESPTKARKIGGYLGSGYTVMASVGHIRDLAQPSQVPAAKKAEFGKFGVDV
NNGFEPYYVVGADKKKTVSDLKAALAKSGELFLATDEDREGEAIAWHLVQALKPKVPVKR
MVFHEITKPAIQASLANTRDVDNHMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFRKASYWDVCADLSANGVDFTARMTALNGARLAGSKDFNSLGE
LQKAKGESALAHYLSEADACAIAQILGAADFVVNSMDTKPYRRRPLPPFTTSTLQQTAGN
RLSMSSRQTMRAAQSLYENGYITYMRTDSVTLSKEAIFAARDCVKSSFGDKYLADSPKQY
ATTSAGAQEAHECIRPAGSTFRNPADLAGVLPADQLKLYTLIWQRTLASQMADATGFTAT
VKLDALAGSFGTANFQASGTVIEFAGFMKVFGGFSEDEQSKALPPMANGDVLKALQVSAD
GHETQPPARYTEASLVKTLEAKEIGRPSTYASIISTIIDRGYVYERGRALIPSWLAFAVI
KLLESNFPTYVDYAFTADMENGLDRIAHGEEAGKDWLYKFYFGDDEAAVAGDSAVAGDFA
MREGLQKQVDQLGEIDAREINTIDIGGGLHVRVGRYGPYLEDTKNLDEEGNARRASIPST
LAPDELSEQVARDLIENNSDGPRVLGTDPQTGGSVEVRNGRFGAYVALVEASDEGESQAA
DDSAKTGAKSSAKSSAKSKKTAKAKPKMASLFKTMDPATITLQDALKLLNLPRLVGVVEE
VDEQGEVKRARIEANNGRYGPYLTKTYERTDSGDSAADFKPDNRSLASEDAIFSVTLDEA
KELFAQPKYGKRTRGAAKPPLRELGEDPESGKPVVIKDGFYGAYITDGVTNRTLPKQYTP
ESIEPQVAFELLAQKRAAGPVKRKRAAAKKTAAKKTAAKKTAAKKPAAKKSTAKKSTSKA
E
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcagaataagcttgtcattgtggagtctcccactaaagcgcgtaaaataggc
ggatatcttggaagcggatacacggttatggcgtctgtaggccatattcgcgatttagcg
cagccaagtcaggtgccagctgctaaaaaggcggaatttggcaagtttggcgtagatgta
aacaatggttttgagccatactacgttgttggcgcagataaaaagaaaacagtttcggac
ttaaaggctgcgctggcaaagtctggcgagttgttccttgcgactgatgaggatcgcgaa
ggagaggcgattgcttggcatcttgtgcaagcgcttaagccaaaagtgccagtaaagcgc
atggtgtttcacgagattacaaagcccgcgattcaagcttcgcttgctaacacgcgagac
gttgacaaccacatggttgatgcgcaagaaacgcgccgcgtgttggatagattgtacggc
tacgagctttcgccagttttgtggcgtaaagttgggccaggtctttcggctggtcgagtg
caatcggttgcaacgcgtttgattgttgagcgcgagcgcgagcgaatggcgtttagaaaa
gcaagctactgggatgtttgcgcggatttgagtgcaaacggcgttgattttacggcgcga
atgacggctctaaacggagcgcgtttggctggttctaaagattttaactcgcttggagag
cttcaaaaagccaagggcgaatctgctttagcgcactatttaagcgaggcagacgcttgc
gcgattgcacaaatccttggcgcggccgattttgttgtaaactcaatggacactaagccg
tatcgccgacgcccattgcctccgtttacaacgtctactcttcagcaaactgctggaaac
cgcttgtctatgagctctcgccaaactatgcgcgcggctcaatctttgtacgaaaacggt
tatataacctacatgcgtacggattctgtaacgctttctaaagaggcgatttttgcggct
cgagattgcgttaagtctagttttggagacaagtatttagcggattctccaaagcagtat
gctacgacttctgcaggcgctcaagaagcgcacgagtgtattcgtcctgctggatctact
tttaggaatcctgcggatttggctggcgtgctgcctgccgatcagcttaagctttacacg
cttatttggcagcgcacgcttgcatctcaaatggcggacgctactggttttacagctaca
gttaagctagacgctttagctggcagttttggaacggctaatttccaggcttctggaacc
gttatcgagtttgctggatttatgaaggtgtttggcggatttagcgaagacgagcagtct
aaggctttgccgcctatggctaatggcgatgttcttaaagctttgcaagttagcgcggat
ggtcatgaaactcagccgccagctcgctatacggaagcgtctttagttaaaacgcttgaa
gctaaagagattggtaggccgtctacttacgctagcattatttctacgattattgaccgc
ggatacgtgtatgagcgtgggcgcgcgttgattccaagctggcttgcttttgcggttatt
aagcttttggaatctaatttcccaacttacgttgactatgcgtttacggcagacatggaa
aatggtctggaccgcattgcgcatggtgaggaagctggtaaggattggctttacaagttt
tactttggagatgacgaggcggcggttgctggcgattctgcggttgctggcgactttgca
atgcgtgaaggcttgcaaaagcaggttgatcagcttggcgagattgacgctcgagagatt
aacacgattgatattggcggcggattgcacgtgcgcgtaggcagatacggcccatatttg
gaagatactaagaatctagacgaagagggcaatgcgcgcagagcttcgattccaagcact
ttagctccagacgagttgagcgagcaggttgctagagatttgattgaaaacaactctgac
ggcccgcgcgttttgggaacagatccgcaaactggcggcagtgtagaagttaggaacggg
cgttttggagcgtacgttgcgcttgttgaggcctcggatgagggcgaatcgcaagcagcc
gacgattctgctaaaactggcgcaaagtcttctgcaaagtcttctgcaaaatccaagaag
actgctaaagctaagccaaaaatggcgtctttgttcaaaacaatggaccctgcaacaata
actttgcaagacgctttgaaacttttgaatttgccgcgattagttggcgttgtagaagaa
gttgacgagcagggcgaggttaagcgcgcaaggattgaggcgaataatgggcgatacggc
ccgtatttgactaagacttacgagcgaacggattctggcgattcggctgcggatttcaag
ccagataatcgctcacttgcaagcgaagacgcgatttttagcgtgactttagacgaagct
aaggagctgtttgcgcaaccaaagtacggcaagcgcacgcgtggagctgcaaaaccgcca
cttagggagcttggagaagacccagaaagcggcaagccagtggttattaaagacggcttc
tacggagcttatattacggacggcgttacgaatcgcacgcttccaaagcaatacacgccc
gagtcgattgagccgcaagttgcgtttgagcttttggcgcaaaagcgcgcggcagggcct
gtaaagcgcaagagagcggccgctaagaagacggccgctaagaagacggctgctaagaaa
acggcagctaaaaagcctgctgcaaaaaagagcacagcaaaaaagtccacgtctaaagcc
gagtaa
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