Gardnerella piotii: K9E43_04010
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Entry
K9E43_04010 CDS
T08320
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gpt
Gardnerella piotii
Pathway
gpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9E43_04010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gpt03019
]
K9E43_04010
03016 Transfer RNA biogenesis [BR:
gpt03016
]
K9E43_04010
Enzymes [BR:
gpt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K9E43_04010
Messenger RNA biogenesis [BR:
gpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K9E43_04010
Transfer RNA biogenesis [BR:
gpt03016
]
Prokaryotic type
tRNA degradation factors
K9E43_04010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
RNase_PH_C
KH_2
PCB_OB
Mug135_C
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
UQA80630
LinkDB
All DBs
Position
1043292..1046051
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AA seq
919 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSNEATLACRIIDRPLRPLFPHTLRNEVQ
VVETILAINPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWNLIYNEGQIKPDEEVVAGGLEAAKPFIKV
ICEAQNELKRIASKETKEFQLFPEYTDELYARIDEIAHADLNEALSIAEKLPRQDRIAEI
KEGVREAIAQEFTDMDEAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQVDALSGPQTKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVLPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGKHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAAALQQAHEARTTILEVINECIDCPAEMSPFAPRIITTTIPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVYISSEGGEAAQKAKEIIDSIANPRIPKAGET
FTGKVVKTTSFGAFVNLTPGSDGLLHISQIRNLANGERIDTVEDVLKEGDTVEVIVQSVD
ERGKISLAIPGFENQESSAPAPRENRGRGSREDREDRDDRRSDRRRAPRDDRDDRGDRGD
RDDRPRRRSVRDDRDSRYDDRENRSDRSSRYDERSSRRDDRRSDRYDNNDYEDRPRRRAP
RDDRYDERDDSASERAERSDRSDDRAERPRRGSDRRVSDRNLRYAADDDHYDEYRAAREE
RAERPRRRIRRDFDPFDED
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
gtggagggtcccgaaattaaggctgtagaagccgttattgataatggttcatttggaaag
cgcacgctgcgttttgaaacaggtcgcctcgctcagcaggcggatggtgctgttgccgca
tacttggatgacgattccatgattttgtcgacgacgactgcaggatctagtccaaaagaa
aactacgacttcttcccactgactgttgatgtggaagaaaaaatgtacgctgctggtaag
attccaggatctttcttccgcagagaaggacgcccgtcaaatgaggcaacgcttgcgtgc
cgtattattgaccgcccattgcgcccgcttttcccacacactttgcgtaacgaagtgcaa
gttgtagaaacgattttggcaattaatccagatgatgcttacgacgttattgctttgaac
gctgcatctgcttctactatgatttctggtttgccatttgaaggcccagtttctggtgtg
cgtttggctttgattgatggccagtgggttgcattccctcgttggagtgagcgtgagcgt
gctgtatttgagattgttgttgctggtcgcgttattgaaaatggcgatgttgcgattgca
atgatcgaagctggcgctggtaagaatgcttggaatttgatttataatgagggtcaaatt
aagccagatgaggaagttgtagctggaggcttagaagccgcaaagccgttcattaaggtt
atttgcgaagcgcaaaatgagttgaagcgaattgcgtctaaggaaaccaaggaattccag
ctgttcccagagtatacggatgagctttatgcaagaatcgatgagattgctcatgcagat
ttgaacgaggctctttctattgcagaaaagcttccacgccaagaccgcattgcggaaatt
aaagaaggcgtgcgcgaggcgattgcgcaagagtttaccgatatggacgaagccgagaaa
gaaaaggaactcggaaatgcgttcaaggagttgcagcgtcagattgttcgtcgtcgtatt
ttgacggaagattaccgtattgacggccgcggcttgcgcgatattcgtacgcttagtgca
gaagttgatattgttcctcgcgttcatggttcggcgctcttccagcgcggcgaaacccag
attttgggcgtaactactttgaacatgcttaagatggaacagcaagtggatgcgctttct
ggcccacaaactaagcgctacatgcacaactacgagatgcctccatactccactggtgaa
acgggtcgcgttggttctccaaagcgccgcgagattggtcatggtgctttggcagagaag
gctttggtgccagttttgccaagtcgcgaagagttcccatatgctattcgtcaagtatcg
gaagctattggttccaacggctctacatctatgggatctgtgtgcgcgtctacgctttcc
ttgctcgctgctggcgttcctttgaaggctccagttgctggcattgctatgggcttggtt
tcgggagacgttgatggcaagcacatctttaagactttgaccgatattcttggcgcagaa
gatgcgtttggagatatggactttaaggttgctggtacgtctgaatttattactgctttg
cagcttgatactaagcttgatggcattccagcagacattttggctgctgctttgcagcag
gctcacgaggcgcgcactacgattcttgaagtgattaacgagtgcattgattgcccagca
gagatgagcccatttgctccacgcattattacaactacgattcctgtagataagattggc
gaagtgattggccctaagggcaagatgattaaccagattcaagaagaaactggtgccgag
attgctattgaagatgacggtactgtgtacatctcttccgaaggtggcgaagctgctcaa
aaggctaaggaaatcattgattctattgcaaatccacgtattccaaaggctggcgagact
tttactggcaaggttgttaagactacgagctttggtgctttcgtaaacttgactcctgga
agcgacggcttattgcatatttcccagattcgtaatcttgctaacggtgagcgcatcgac
accgttgaagatgtgcttaaagagggagataccgtagaagtaatcgtgcaaagcgtagac
gagcgcggcaagatctctttggcaattccaggttttgagaatcaagagtcttcggcgcca
gcgcctcgtgaaaaccgtggtcgtggatctcgcgaagatcgtgaagatagggatgatcgc
agaagtgaccgtaggcgtgctccacgcgacgatagggatgatcgtggagacagaggagat
agagatgatcgtcctcgccgccgtagcgttcgcgatgatcgcgattcgcgttatgacgat
agggaaaatcgttcggatcgttcaagccgctacgatgagcgctcttctagaagagatgat
cgcagaagcgatcgctacgataacaacgattatgaagaccgtcctcgccgccgcgctcct
cgcgacgaccgatacgacgagcgagatgatagtgcaagtgagcgcgcagagcgttccgat
cgttccgacgaccgcgcagagcgtcctcgccgtggatcggatcgtagagtgagcgaccgc
aatttgcgctacgctgcagacgacgaccactacgatgagtatcgcgctgctcgcgaggag
cgcgcagaacgccctcgtcgcagaatccgtcgcgattttgacccatttgacgaggactaa
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