Gardnerella piotii: K9E43_05845
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Entry
K9E43_05845 CDS
T08320
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gpt
Gardnerella piotii
Pathway
gpt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9E43_05845 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gpt03400
]
K9E43_05845 (mfd)
Enzymes [BR:
gpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9E43_05845 (mfd)
DNA repair and recombination proteins [BR:
gpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K9E43_05845 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AroM
Motif
Other DBs
NCBI-ProteinID:
UQA80952
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All DBs
Position
1476215..1479850
Genome browser
AA seq
1211 aa
AA seq
DB search
MADKYDSFANKMLDSKDFNISDASFESILKDICKKNDSFKSLALLEEDFSNHLNVYCPSG
ARSAVAAAMATKKPVVLVVPSGRDALESLESIRDFYNGNPKDIANLEAWETLPHERLSPR
ADTVASRMAVFRRLKHPQSGEDGKSGKSSKSAMFSPIRVLVMPVRSLIQPVVKGLCNVEP
LVFECGNEISIEVATKRLVENSYNRVELVMNRAEFAVRGGIIDVFPPTMDHPVRIEFFGD
EIDAIKQFHASDQRTYGKNINSVWATPCRELQLTKDIQKRAKSLIGKIPNAQDMLESIAN
AIPVEGMESLIPALVDNMEPVENLLDKNAIILVSDLEKCKRAANDLVKTANEFLAASWHV
AASGKGAGAPITFDKASFLDFGSVLENLENNNHQVINLNSFAMDSTSKSQATVDSKEENE
NKVVKNNYLDLCIKSPQEFRGDSEKISSGISGLISNGYKVYISAASSGILSRLARAVRAS
GVFDFLAVQSKIVDGFIDTQSKIAILSERDLTGKSSSASGFKSPKRRKKEIDLLDLKPGD
FVVHEQHGIGKFIGMRQRNVKTSNGEATREYLEIEYAPSKRNAPADKLFIPTDQLDLVSK
YIGAEIPKLNKLGGADWAATKEKARKAVQEVAQDLIKLYSARASSSGFAFSADTPWQKEL
EDDFPYQETPDQLTTIDEVKQDMQKPIPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVV
VLAPTTLLVQQHYETFTNRFSGFPITVAAMSRFQSEKEVNNTIQGLESGEVDVVIGTHKL
LNPNIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREM
STLATPPEDRLPVLTYVGAYEDAQVAACVKRELLRGGQVFYVHNRVEDISKVATNIQKLV
PDARVAIAHGKMGEKQLDTIIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGL
SQLHQLRGRVGRGRERAYAYFLYDPSKPMTQQAHDRLATIAQYTALGSGFDVAMKDLELR
GTGNLLGNAQSGHIEGVGFDLYVRMVCEAVEKYKEPEHKETVSTSIDLPVEASIPVDYID
SDKLRLEAYRKLASANNNKDLQELRDELLDRFGEPPEAFSILCDVARLRFKARDLGITQI
SSQGKSVRVIGLDPKESLWMRLQRIYRGVKYRPLTHTLIIPSPFESSLGTSAMSEREILD
WVRQLLEDLAW
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggcagataagtatgattcttttgctaacaaaatgctagattctaaagattttaatatt
tctgatgcttcttttgaaagcatacttaaagatatttgtaagaaaaatgattcgtttaag
tctttagctttgcttgaagaagatttttctaatcatcttaatgtgtattgtccaagtgga
gctagatctgctgtagctgctgcaatggctactaaaaagcctgttgttttagtggttcca
tctggtagagatgctttggaatcgcttgaatcaatacgcgatttttataatgggaaccct
aaagatattgctaatcttgaagcttgggaaactcttccgcacgagcgtctttctcctaga
gcagatactgtagcaagcagaatggcggtttttaggcgattaaagcatccgcaaagtggg
gaagatggcaaaagtggcaaaagcagcaaaagtgccatgtttagcccaattcgcgttctt
gttatgccagttcgatcccttattcagccagttgttaagggtctttgcaacgtagagccg
cttgtttttgaatgtggcaatgagatttctattgaggttgctacaaagcgacttgttgaa
aactcgtataatcgcgtggaacttgttatgaatcgcgctgaatttgctgttcgaggcgga
atcatagacgtttttcctccaacaatggatcatcctgtgcgtattgagttttttggagat
gagattgacgcaatcaaacaattccacgcatctgatcagcgcacttatgggaagaatatt
aatagtgtttgggctacaccttgccgagaattgcaacttacaaaagatattcaaaaacga
gcgaagtctttgattggtaaaattccaaatgctcaagatatgcttgaatcaatcgcaaat
gcaatacctgtagagggtatggagtctttgattccagcattagttgacaacatggaaccc
gtggaaaatttgcttgataaaaacgcaataattttggtttccgacttagaaaaatgcaag
cgcgcagctaacgatttagttaaaacagcaaacgagtttttggctgcaagttggcatgtt
gctgcgtctggtaagggtgctggcgctccaataacattcgataaagcgagttttcttgat
tttggcagtgttttagaaaatcttgaaaacaacaatcatcaagtaattaacttaaacagt
tttgcaatggattcaacgagtaaatcgcaagcaaccgttgattctaaagaagaaaacgaa
aataaagtcgtaaaaaataactatttagacttgtgcattaaatctcctcaagaatttaga
ggagatagtgagaagatttctagcggaatatctggtcttatttctaacggatacaaggtt
tatattagcgctgcttcaagtggaattttatcaaggcttgcgcgagctgtacgcgcaagt
ggcgtatttgattttttggcagttcaatcgaaaatagttgacggttttatagatacgcaa
agtaaaatcgcaattcttagcgaaagagatttaacaggaaagtcttcttctgcaagtggt
tttaagtcgccaaagcgtagaaaaaaagaaatcgaccttctagaccttaagccaggagat
tttgttgttcacgaacagcacggaattggcaaatttataggcatgaggcagaggaatgta
aaaacttcaaacggagaagctacgcgcgaatatttggaaattgagtatgcgccaagtaaa
cgcaacgctcctgcggataagctttttattccaacagatcagcttgatttggttagcaaa
tatattggtgcagagattccaaagctaaataagcttggaggtgcagactgggctgctaca
aaagaaaaagcgagaaaagctgttcaagaagttgcgcaagacttgattaaactttattct
gcacgagcatctagcagcggatttgcttttagcgcagacactccttggcaaaaagagctt
gaggatgattttccataccaagaaactccagatcagcttacgactattgacgaagtcaag
caagatatgcaaaagccaattccgatggataggctgatttgcggagacgttggttttggc
aaaactgagattgctgtgcgcgctgcttttaaggcagttcaagacggcaagcaagtggtt
gttctagcgccaacaactcttttagttcaacaacattacgagacttttactaatcgcttt
tctggattccctataactgttgctgcaatgagtagattccaaagcgaaaaagaggttaac
aatactattcaaggccttgaatcaggagaagttgatgttgttattggcacgcataagctt
ttgaatccaaacataaaattcaaggatttaggtttggtgattatagacgaagagcagcgt
tttggcgttgagcacaaggagactttgaaagctttgcgtacaaacgtagacgttcttagt
ctttcggcaacgccaattcctagaacacttgaaatggctgttactggtattcgcgaaatg
tctactcttgctacgcctccggaagaccgtttgccagtcttgacttatgttggagcctac
gaagacgcgcaagtggcagcttgcgttaagcgagagctgcttagaggtggccaagtattt
tacgtgcacaatagagtagaagatattagtaaagttgcgactaatattcaaaaacttgtt
ccagatgctagggttgcgattgcgcacggaaaaatgggtgagaagcagcttgacactatt
attcgtgatttttggcatagagatattgacgttcttgtttgcactacgattattgaaacg
ggattagatatttctaacgctaatacgcttattgtggatcatgcagacagattcggctta
agccagcttcatcaattgcgcgggcgcgttggcagaggtcgtgagcgtgcgtacgcatac
tttttgtatgatccgtctaagcctatgactcaacaagcgcatgatcgccttgcaacaatt
gctcaatatactgctcttggatctggattcgatgttgctatgaaggatttggagcttaga
ggcactggaaacttgcttggcaatgcgcaaagtggccacattgaaggcgttggatttgat
ttatacgtgcgaatggtttgtgaagctgttgaaaaatacaaagagccagagcataaagaa
actgtttccacgtctattgatttgcctgttgaagcttcgattccagttgattatattgat
tccgacaagcttcgtttagaagcgtaccgtaagcttgcttccgctaacaataataaggat
ttgcaagagttgcgagatgagttgcttgatcgttttggtgagccgcctgaagcgtttagc
atattgtgcgatgttgctcgcttgcgttttaaggctcgtgatcttggtattacgcaaatt
agctctcaaggtaaatcggttcgtgttattggtttagatccaaaagaatcgttgtggatg
cgtttgcaaaggatttaccgcggagttaagtatcgtccgcttactcatacgcttattatt
ccatcgccttttgaatcttcacttggaactagcgcaatgagtgagcgcgaaatacttgat
tgggtgcgtcaacttcttgaagatttagcttggtaa
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