Gibbsiella quercinecans: AWC35_15205
Help
Entry
AWC35_15205 CDS
T05060
Name
(GenBank) RNA polymerase subunit sigma
KO
K03086
RNA polymerase primary sigma factor
Organism
gqu
Gibbsiella quercinecans
Pathway
gqu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gqu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AWC35_15205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gqu03021
]
AWC35_15205
Transcription machinery [BR:
gqu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AWC35_15205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
HTH_SUN2
DNA_ligase_A_N
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ATA20580
UniProt:
A0A250B2W9
LinkDB
All DBs
Position
complement(3356347..3358185)
Genome browser
AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTTDTDEDAVEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTA
THIGSELATEDQDDDEEEEDDDDDADDDNSIDPELARQKFAELRDQYEATRLVIKKNGRS
HASSAEEILKLSEVFKQFRLVPKQFDFLVNSMRTMMDRVRTQERIIMKMCVEQCKMPKKN
FVNLFASNETSDAWFEAALAMAKPWSEKLKDVEEDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgactccgaccag
atcgaagacatcatccagatgatcaacgacatgggcatccaggtgatggaagaagcaccg
gacgccgatgatttgatgctggccgagaacaccaccgataccgatgaagatgcggtagaa
gcggccgcccaggtgctttccagcgttgaatccgagatcggccgtactaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgttgagctactgacgcgcgaaggcgaaatcgac
atcgctaaacgtatcgaagacggtatcaatcaggtgcagtgctccgtcgccgaatacccg
gaagccatcacctatctgctggagcagtatgatcgcgttgaagcaggtgaatcgcgcctg
tccgatctgatcaccggcttcgtcgatcctaacgcggaagaggacatcgcccccaccgcc
acccatatcggttcggaactggcgaccgaagatcaagatgacgacgaagaagaggaagac
gacgacgacgatgctgacgacgataacagcatcgatccggaactggcgcgccagaagttc
gccgaactgcgcgatcagtacgaagcgactcgcctggtcatcaagaaaaacggccgcagc
cacgccagctccgcagaagaaattctgaaactgtcggaagtgttcaaacagttccgcctg
gtgccaaaacagttcgacttcctggtcaacagcatgcgtaccatgatggatcgcgtgcgt
acccaggaacgcatcatcatgaagatgtgcgttgaacagtgcaaaatgccgaagaaaaac
ttcgtcaatctgttcgccagcaacgaaaccagcgacgcctggttcgaagcggcgctggcg
atggccaaaccgtggtctgaaaagctgaaagacgttgaagaagacgttcagcgcagcctg
cagaaactgcgccagatcgaagaagaaaccggcctgaccatcgagcaggtaaaagacatc
aaccgccgtatgtccattggcgaagcgaaagcgcgccgggcgaagaaagaaatggttgag
gctaacctgcgtctggttatttcgatcgccaagaaatacaccaaccgcggcctgcagttc
ctggatctgattcaggaaggcaacatcggcctgatgaaagcggtcgacaagttcgaatat
cgccgtggctacaagttctccacctatgcgacttggtggatccgccaggcgatcacccgc
tccatcgccgaccaggcgcgcaccatccgtattccggtgcatatgattgagaccatcaac
aagctcaaccgtatttcgcgccagatgctgcaggaaatgggccgcgaaccgacgccggaa
gagctggctgaacgtatgctgatgccggaagacaaaatccgcaaggtgctgaagatcgcc
aaagagccaatttcgatggaaacgccaattggtgatgacgaagattcacatctgggcgat
ttcatcgaggacaccaccctcgagttgccgctggattccgcaacctctgaaagcctgcgc
tcggcaacgcacgatgtgctggccggcctgaccgcgcgtgaagcgaaagtgctgcgcatg
cgtttcggtatcgatatgaacaccgaccatacgttggaagaagtcggtaaacagttcgac
gttacccgtgaacgtattcgccagatcgaagccaaagcgctgcgtaaactgcgccaccca
agccgttcggaagtgcttcgcagcttcctggatgactaa
DBGET
integrated database retrieval system