Gibbsiella quercinecans: AWC35_16865
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Entry
AWC35_16865 CDS
T05060
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gqu
Gibbsiella quercinecans
Pathway
gqu03030
DNA replication
gqu03430
Mismatch repair
gqu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWC35_16865 (dnaE)
03430 Mismatch repair
AWC35_16865 (dnaE)
03440 Homologous recombination
AWC35_16865 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gqu03032
]
AWC35_16865 (dnaE)
03400 DNA repair and recombination proteins [BR:
gqu03400
]
AWC35_16865 (dnaE)
Enzymes [BR:
gqu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AWC35_16865 (dnaE)
DNA replication proteins [BR:
gqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AWC35_16865 (dnaE)
DNA repair and recombination proteins [BR:
gqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AWC35_16865 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ATA20879
UniProt:
A0A250B3X5
LinkDB
All DBs
Position
3743623..3747111
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFHVQSEALGDELAQLTVLAANNEGYQNLTLLISRAYQRGYGGEGPTIDRDW
LIEHRNGLILLSGGRMGDVGKFILRGNQAVVDQCLAFYQEYFPDSYYLELIRTGRQDEEN
YLHAVVSLAAERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYM
RSEDEMCELFADIPEALLNSVEIAKRCNVTIRLGEYFLPQFPTGEMTTEDFLVAKAKQGL
EERLEFLFPEPEERAKRRPEYDERLEIELQVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGQEPIDIAAIPLEDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
LSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEAGAKSQGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNSGEQGYFKDLFDLCARVDIKKLNRRVLEKLIMSGAFDRLGPHRAAL
MNALGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYASVAPWPEQVVLDGERETLG
LYLTGHPITQYLKEIERYAGGQRLKDMHPTERGKMITAAGLVVAARVMITKRGNRIGICT
LDDRSGRLEVMLFTEALEKYQHLLEKDRILIASGQVSFDDFSGGLKMMARELMDISEARE
KYARGLAISLTDRQIDDQLLTRLRQSLEPHRSGTIPVHLYYQREDARARLRFGAAWRVTP
TDRLLIDLRTLVGNEQVDLEFD
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccccgttttattcatctgcgtgttcatagcgactattccatgatcgatggg
ctggctaaagtcgggccattggtgaaacgagccgccgcgttagccatgcctgctctggcc
attaccgatttcaccaacctgtgcggcctggtcaagttttatggcagcgcgcatggtgcc
gggatcaaaccgattatcggcgccgatttccatgtgcaaagcgaagccctgggcgatgag
ttggcgcaactgacggtgttggcggccaataatgaaggttatcagaacctgacgctgttg
atttcgcgcgcctatcagcgcggttacggcggcgaaggcccgactatcgatcgcgattgg
ttgattgaacaccgcaacggcctgatcctgctgtctggcggccggatgggggacgtgggc
aagtttatcctgcgcggcaatcaggcggtggttgatcaatgcctggcgttttatcaggaa
tatttcccggacagctactatttggagctgattcgtaccggccggcaggatgaagaaaac
tacctgcacgccgtggtgtcgctggcagccgagcgcggcctgccggtggtggcgaccaac
gatgtgcgcttcctggtggccgacgattttgacgcccacgaaatccgcgtggcgatccat
gacggttttaccctcgacgatccaaaacgcccgcgtaactatagcgcacagcaatatatg
cgcagcgaagatgaaatgtgcgagctgtttgccgacattccggaagcgctgctaaacagt
gttgagatcgccaagcgctgcaacgtgaccattcgtctgggcgagtacttcctgccgcag
ttcccaaccggtgagatgaccaccgaagatttcctggttgccaaggccaaacagggcctg
gaagaacgcctggaattcctgttcccggagccggaagaacgcgccaagcgccggccggaa
tacgatgagcggttggagatcgaactgcaggttatcaaccagatgggcttccccggctac
ttcctgatcgtgatggagtttatccagtggtccaaggacaatgacgtgccggttgggccg
gggcgcggctccggcgcgggctcattggtggcttactcgctgaaaatcaccgatcttgat
ccgctggaattcgatctgctgttcgaacgtttcctgaacccggaacgtgtctcgatgcct
gacttcgacgtcgatttctgcatggaaaaacgcgatcgggtcattgaccacgtagcggac
atgtacggccgcgatgcggtttcgcaaatcatcaccttcggtaccatggcggcgaaagcg
gttatccgcgacgtcggccgcgtattggggcacccgtatggttttgtcgatcgtatttcc
aagctggtgccgcccgatccgggcatgacgctggaaaaagcctttgccgccgaaccgcaa
ctgccggaaatctacgaagcggacgaagaggtcaaggcgctgatcgacatggcgcgcaag
ctggaaggggtgacgcgtaacgccggtaagcacgccggtggggtggtgatcgcacccacc
aaaatcaccgattttgcgccgctgtattgcgatgccgaagggaaccatccggttacccag
tttgataaaaacgacgttgagtatgccggcctggtgaagttcgacttcctgggcctgcgc
acgctgaccatcatcgactgggcgctggagatgatcaacgcccggcgggccaaggccggg
caagagccgatagacattgccgccatcccgcttgaggacaagaaaagcttcgacatgttg
cagcgttcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaagatttgatc
aagcgcctgaagcccgactgcttcgaagatatgatcgcgctggtggccctgttccgccca
gggcctttgcagtccggcatggtggataactttatcgaccgtaagcacgggcgcgaagaa
ttatcttacccggatattcagtggcagcatgaatcgctgaagccggtactggaaccgacc
tacggcatcatcctgtatcaggaacaggtcatgcagatagcccaggttctggcgggctat
acgctgggcggcgcagatatgttgcgccgcgccatgggtaagaaaaaaccggaagagatg
gcgaaacagcgctcggtgtttgaagccggcgccaagagccagggcatcgacggcgagctg
tcgatgaaaatcttcgatttggtggaaaagtttgccggctacggctttaacaaatcccac
tccgcggcctatgcactggtttcctatcagacgctgtggctgaaggcgcactatccggcc
gagtttatggccgcggtaatgaccgccgatatggacaacaccgataaggtggttggcctg
gtggatgagtgctggcgtatggggctgaaaatcctgccgccggacatcaacagcggcctg
tatcatttccacgttaacgatgacggggaaatcgtctacggcattggcgccattaaaggc
gttggcgaaggcccgattgaagctattatcgaagcgcgtaacagtggcgaacaggggtat
ttcaaagacctgttcgatctgtgcgcccgcgttgatattaaaaagctcaatcgccgggtg
ctggaaaaactgatcatgtccggggcgtttgatcggctggggccgcaccgcgccgcgctg
atgaatgcgctgggcgatgcgctgaaagcggccgatcagcacgccaaggccgaagcgatc
ggccaggtggatatgtttggcgtgctggcggatgcgccggagcaggtggaacaatcctac
gccagcgtagcaccgtggccggagcaggtggtgctggacggcgagcgtgagaccctgggg
ctgtatttgaccggccacccgatcacgcagtacctgaaggaaatcgaacgttacgccggc
ggccagcgcctgaaagatatgcacccaaccgagcgcggaaaaatgatcaccgccgccggg
ctggtggttgccgccagggtgatgatcaccaagcgtggcaaccgcattgggatttgtacg
ctggatgaccgttccgggcgcctggaggtgatgttattcaccgaggcattggaaaaatac
cagcatttgttggaaaaagaccgtatcctgatcgccagtggacaggtcagctttgatgac
tttagcggtgggcttaaaatgatggcccgcgagctaatggatatcagtgaagcccgtgaa
aaatacgctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttg
acccgtctccgtcagtcgttggaaccccatcgctcggggacgattccagtgcatctctac
tatcaacgggaagatgcgcgcgcaaggctgcgttttggggccgcatggcgtgtaacgccc
actgaccgcttgttgatagatttgcggactttggtaggtaatgagcaggtggacctggaa
tttgactaa
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