Gibbsiella quercinecans: AWC35_24150
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Entry
AWC35_24150 CDS
T05060
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
gqu
Gibbsiella quercinecans
Brite
KEGG Orthology (KO) [BR:
gqu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gqu03019
]
AWC35_24150
Enzymes [BR:
gqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AWC35_24150
Messenger RNA biogenesis [BR:
gqu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AWC35_24150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
nSTAND3
T2SSE
PhoH
ResIII
AAA_16
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ATA22623
UniProt:
A0A250B8Q8
LinkDB
All DBs
Position
complement(5449078..5452920)
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRLRRRLHGSKKIKDPAAQQAVIGEITQDIAAARLKVQQRQASCPKITYPAGLPV
SQKKDDILNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGVIGHTQPRRLAARTVA
NRIADELETPLGGSVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNAPIIEVSGRTYPVEVR
YRPVVDDADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALARLNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVHLLEELGAIKTAVSGHYQLTPQGRQLAQLPIDP
RLARMVLEAQKTGSVREVMIITAALSIQDPRERPLEKQQASDEKHRRFADKDSDFMAFVN
LWDYLKQQQKEHSSNQFRRLCRSEFLNYLRVREWQDIYTQLRQVVKELGLQVNSVPSDYR
AVHLALLTGLLSHIGQKDADKQEYTGARNARFAVFPGSGLFKKPPKWVMVAELVETSRLW
GRIAARIEPEWVEPLAQHLVKHSYSEPHWSKSQGAVMATEKVTLFGLPIVAARLVNYSSI
DPLLCRELFIRHALVEGDWQTRHAFFGANLKLRAEVEELEHKSRRRDILVDDETLFNFYD
RRIPNEVVSARHFDQWWKATAAQQPDLLSFEKEMLIKDGANKVSALDYPNAWHQGNLKLR
LSYQFEPGADADGVTVHIPLPILNQVEEAGFEWQVPGLRRELIIALIKSLPKPVRRNFVP
APNYAEAFLGRVTSLDMPLLDALERELRRMTGVTVSRDDWQWDQVPDHLKVTFRVVGEKN
KPLREGKDLAALKLSLKDKVQQTLSAVADDGLEQRDLHVWSFGNLPVFYEQKRGGYAVKA
YPALVDEKDSVAIRLFDSELEQQQMMWQGTRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLDLIDDCIACGVDKLVAEHGGPVWQETQFAALQEKVRAELNETVVEIAKQVEQIL
TTVFNINKRLKGRVDMSLALALSDIKTQLGGLIYRGFVTANGWKRLVDTQRYLHGIERRL
EKLSIDPHRDRAQMLRVEQVQQAWQQWLNKLPAKRQQDDEVKEVRWMIEELRVSLFAQQL
GTPYPISDKRILQTIDQLSA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtgatcaacaacgcctgcgccgccggctgcacggcagtaaaaaaataaaagat
cctgcggcgcagcaggccgtcatcggcgaaataacccaggatattgccgccgcacgcctg
aaagtgcagcaacgccaggcatcgtgcccgaaaatcacctatccggccggcctgccggtc
agccagaaaaaagacgatattcttaatgcgatccgcgatcatcaggtggtgatcgtcgcc
ggtgaaaccggttcgggcaaaaccacgcagttgccaaaaatctgcctggagctggggcgc
ggggtgaaaggcgtgatcggccatacccagccacggcgcctggccgcgcgcaccgtcgcc
aaccgcatcgccgatgagctggaaaccccgctgggcggcagtgtgggctacaaggtgcgc
tttaacgatcaggtcggcgacaacacgctggtcaaactgatgaccgacggtatcctgctg
gcggaaatccagcaggatcggctgttgatgcaatacgatacgctgatcatcgatgaggcc
cacgaacgcagcctgaacatcgattttatcctcggctacctgcgcgaactgttgcctaaa
cgccccgatctgaaagtgattattacctcggcgaccattgatccgcagcgtttctcgcgc
cacttcaacaacgcgccgattattgaggtttccggccggacttacccggttgaagtgcgt
taccgcccggtggtggatgatgccgacgacaccgagcgcgatcagctacaggccattttt
gacgccgtggacgaacttggccgcgaagggccgggtgatattctgatctttatgagcggc
gagcgtgaaatccgcgataccgccgatgcgttggcgcggctgaacctgccgcacacggaa
gtgttgccgctgtatgcccgcttgtcgaacagcgaacagaaccgcgtttttcaatcgcac
cacggccgccgcattgtgctggcgactaacgtggcggaaacctcgctcaccgtgcccggc
atcaaatacgtgatcgatccgggcaccgcacgcattagccgttacagcttccgcaccaag
gtgcaacgtctgccgatcgaaccggtttcccaggcatcggccaaccagcgtaaagggcgc
tgcggccgcgtttcggaaggcatctgtatccggctgtactccgaacaggattttctctcc
cgcccggaatttaccgatccggaaattctgcgcaccaacctggcatcggttattttgcag
atgacgtcgctggggctgggggatatcgccgcgttcccgtttgtcgaagctccggataaa
cgcaatattcaggacggtgtgcacctgcttgaagagcttggcgccattaaaaccgccgtc
agcgggcattaccagctcacgccgcagggccggcagttggcgcagttgccgatcgatccg
cgcctggcgcgcatggtgttggaagcgcaaaaaactggcagcgtgcgcgaagtcatgatc
atcaccgcagcgctctccattcaggatccgcgtgaacggccgttggaaaaacagcaggct
tcggatgaaaaacaccgccgctttgccgacaaagactccgacttcatggcgttcgtcaac
ctgtgggattacctgaaacaacagcagaaagaacattcatcgaaccagttccgccggctt
tgccgcagtgaattcctgaactacctgcgggtgcgcgagtggcaggatatttacacccaa
ctgcgccaggtggtgaaagagctggggctgcaggtgaacagcgtgccttccgattatcgc
gccgttcacctggcgctgctcaccggcctgctgtcgcacatcggccagaaagacgcggat
aagcaggaatacaccggcgcgcgcaacgcccgctttgccgttttccctggatcggggctg
ttcaaaaagccgccgaagtgggtgatggtagccgagctggtggaaaccagccgcctgtgg
gggcggattgccgcgcgtattgagccggagtgggtagaaccgctggcgcagcatctggtg
aagcacagctacagtgagccgcattggtcaaaatcgcagggggcggtgatggccacggaa
aaggtcacgctgtttggcctgccgattgtggcggcgcgcctggtgaattacagcagtatc
gatccgctgctgtgccgcgagctgtttatccgccacgcgctggtggaaggggattggcag
acgcggcatgcgttttttggcgccaacctcaagctgcgggccgaagtggaagagctggag
cacaagtcgcgccgccgcgatattctggtagacgatgaaacgttgtttaatttttacgat
cgtcgtatcccgaacgaggtggtttcggcacgccactttgatcaatggtggaaagctacc
gccgcacagcagccggatttgctcagttttgaaaaagagatgctgatcaaagacggtgcc
aataaggtgagcgcgctggattacccgaacgcttggcaccagggcaacttgaaactgcgg
ttgagctaccagtttgagccgggcgccgacgctgatggcgtcacggtgcatatcccgttg
ccgatcctcaaccaggttgaagaagccggcttcgaatggcaggtacccggcctgcggcgc
gaactgattatcgccctgattaaatcattgccgaagccggtgcgccgcaatttcgtgccg
gcgcccaactatgcggaagcgtttctggggcgggtgacctcgctggacatgccgctgctg
gatgcgctggagcgagaactgcgccgcatgacgggtgttacggtgtcacgtgatgactgg
caatgggatcaggtgcccgatcacctgaaagtgaccttccgcgtggtgggcgaaaaaaac
aaaccgctgcgtgagggcaaagatttggcggcgctgaaacttagcctgaaggataaggtg
cagcaaacgctttccgccgtggctgatgacgggctggagcagcgtgatctgcacgtctgg
agttttggcaacctgccagtgttctacgaacaaaaacgcggcggctatgcagtgaaggcc
tacccggcgctggtcgatgaaaaagacagcgtggcgatccgcctgtttgacagcgagctg
gagcagcagcaaatgatgtggcaaggtacgcgccgcctgctgctgttgaatatcccatcg
cccatcaaatacctgcatgagaaattgcccaacaaagccaaactggggctgtatttcaac
ccgtacggtaaagtgttggatctgatcgacgactgcatcgcctgcggggtggataaactg
gttgccgaacacggtgggccggtgtggcaggaaacacagtttgccgcgttgcaggagaag
gtgcgcgccgagctaaatgaaacggtggtcgagatcgccaagcaggtggagcaaatcctg
acgaccgtattcaacatcaataagcgtttgaaagggcgcgtggatatgtcgttggcgctg
gcgctttccgacatcaaaacccagcttggcggcctgatctatcgcggtttcgtcaccgcc
aacggctggaagcgcctggtggatacccagcgctacctgcacggcatcgagcgccgtttg
gagaagctcagcatcgatccgcaccgtgaccgcgcccagatgctgcgggtggagcaggtg
cagcaggcgtggcagcagtggctcaacaagctgcctgccaaacgccagcaggacgatgag
gtgaaagaagtgcgctggatgattgaagagctgcgcgtgagcctgtttgcccagcagttg
ggcacgccgtacccgatctccgacaagcgtatcttgcaaaccatcgatcagctatcggca
tag
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