Gossypium raimondii: 105761192
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Entry
105761192 CDS
T04129
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105761192
09123 Folding, sorting and degradation
03018 RNA degradation
105761192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105761192
03041 Spliceosome [BR:
gra03041
]
105761192
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105761192
mRNA degradation factors
5'-3' decay
Lsm complex
105761192
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105761192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
105761192
NCBI-ProteinID:
XP_012434395
UniProt:
A0A0D2NFB2
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Position
11:complement(6378656..6381859)
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AA seq
98 aa
AA seq
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MSTGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEELDSALDLSNLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactggccctgggctcgagtctcttgtagatcagactatctcggtcattaccaat
gatggacgtaacatagtgggagttttaaaaggctttgatcaggctacaaatatcattctc
gatgaatctcatgaacgcgtatactccaccaaggaaggtgttcagcaacttgtgttgggc
ttgtacataataagaggtgacaacataagtgttgttggtgaactggatgaagagctggat
tctgcactcgacttgtcgaacctgagagcacatcctttgaagccagttatccattga
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