KEGG T04129: 105761724

Gossypium raimondii: 105761724

Entry

105761724         CDS       T04129

Name

(RefSeq) probable CCR4-associated factor 1 homolog 11

K12581

CCR4-NOT transcription complex subunit 7/8

Organism

gra Gossypium raimondii

Pathway

gra03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:gra00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105761724
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105761724
Messenger RNA biogenesis [BR:gra03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105761724
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     105761724

SSDB

Motif

Pfam:

CAF1

Other DBs

NCBI-GeneID:

105761724

NCBI-ProteinID:

XP_012435072

UniProt:

A0A0D2SQG8

LinkDB

Position

11:945443..946596

AA seq 277 aa
MSNKPRESVVIRSVWSENLDSEFEIIRSIIDVFPIISMDTEFPGVVVRSEGAGGCHRSRR
IDATENYQSLKANVDILKLIQIGLTLSDADGNLPNLGTENRYIWEFNFKDFDVGNDVHAP
DSVELLRRQGIDFEKNLELGIELVRFAELMMSSGLVLNDAVTWVTFHCAYDFGYLVKCLT
GGLLPDQLTEFLELVRVFFGDRIYDVKHLMKFCAGLHGGLDRASTDLGVKRAIGKSHQAG
SDSLLTLHAWLKIKERYFANGDPIEKYANVLYGLEVD

NT seq 834 nt +upstreamnt +downstreamnt
atgtcgaataaaccgcgagagtcggtcgtgatccgatccgtttggtcggaaaatttggat
tccgaattcgagataatcagatccataatcgacgttttcccgatcatttcaatggacaca
gagtttccaggagttgtcgtccgatcggagggcgccggcggctgccatcgctcccgtcga
attgacgccactgagaattaccaaagcctcaaagcgaatgttgacatactaaagcttatc
caaatcggcctaacgttatcagacgctgacgggaatttaccaaatctcggcaccgagaac
cggtacatttgggagttcaatttcaaagatttcgatgtggggaatgatgtacatgcgcct
gattccgtcgagcttctccgtcgccaaggcatagatttcgagaagaacctggaacttggg
atcgagttggtccggttcgcggaactgatgatgtcatcgggactcgtattgaacgacgcc
gttacgtgggtgactttccactgcgcgtatgattttggatacctcgtgaaatgcttaacc
ggtgggttattgcctgaccaactcactgagtttttggaactcgtgcgagtgttcttcgga
gacagaatctacgacgtcaaacacttgatgaaattctgcgctggattacatggagggctc
gatcgtgcgtctacagatttgggagtaaagcgtgcaattgggaagagtcatcaagctggt
tctgatagcttgttaacattgcacgcttggttgaagataaaggaaaggtattttgcaaat
ggggacccaattgaaaagtatgctaatgttctttatggtttagaagttgactaa

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