KEGG   Gossypium raimondii: 105762722
Entry
105762722         CDS       T04129                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gra  Gossypium raimondii
Pathway
gra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105762722
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gra03041]
    105762722
Spliceosome [BR:gra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    105762722
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 WD40_CDC20-Fz EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_Aladin PRP4 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_SPT8 WD40_like Cytochrom_D1
Other DBs
NCBI-GeneID: 105762722
NCBI-ProteinID: XP_012436034
UniProt: A0A0D2R742
LinkDB
Position
12:complement(1782229..1786355)
AA seq 559 aa
MEVDDDNSPTSAAVPDGETTVPTANSTPVQPPAVPPAVVPPTIAPLPAVVPPIAPIPAVR
PPVFKPPVPQNGEVKAVDSDSDHEDDGRATAGEYEISEESRLVRERQEKAMQELLMKRRA
AALAVPTNDMAVRTRLRRLGEPITLFGEREMERRERLRMIMAKLDSEGQLEKLMKAHEEE
EAAISAKAEDIEEDIEYPFYTEGPKELLDARIDIAKYSIVKAAARLQRARRKRDDPDEDM
DAEIDWALRQAGNLVLDCSEIGDDRPLSGCSFSRDGKLLATCSLSGVAKLWSMPRVSKVS
ALKGHTERATDVTFSPVHDLLATASADRTAKLWSSDGSLLKTFGGHLDRLARIAFHPSGK
YLGTTSFDKTWRLWDIDTGMELLLQEGHSRSVYGIAFHQDGSLVASCGLDALARVWDLRT
GRSILALEGHVKPVLGASFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHSNLISQVK
FEPQEGYYLVTSSYDMTAKVWSGRDFKPVKSLPGHEAKVTASDISADGRYIVTVSHDRTI
KLWTAGNIEQENDMDWTEG
NT seq 1680 nt   +upstreamnt  +downstreamnt
atggaagttgatgatgacaacagtccaacttcagctgcagttccggatggcgaaaccacg
gtgcctacagctaatagcacaccggttcagcctccagcggtcccacctgcagttgtacca
ccaactattgctccactaccggcagttgtgccacctattgctccaatacctgcagttcgc
cctcccgtctttaaaccacctgtgcctcaaaatggtgaggtgaaagctgttgattcagac
tctgaccatgaggatgatgggcgagctacagctggtgaatatgagatctcagaagagagc
agactggttcgagagcggcaagaaaaggcaatgcaagaacttttgatgaaacgtcgtgct
gctgcactggcagttcctactaatgacatggctgtccggactcgacttcgccgacttggt
gaacccataacactttttggagaaagagagatggaaagacgggaaaggctgcgaatgatt
atggcaaagctggattctgaggggcaactggagaaattgatgaaagctcacgaggaggaa
gaggctgcaatttctgctaaggcagaggacattgaggaagacattgaatatcccttttat
actgagggtccaaaagagcttctggatgctagaattgatattgcaaagtactctattgta
aaggcagctgcacgtcttcagcgtgcacggagaaaaagggatgatccagatgaagatatg
gatgctgaaattgattgggctctaaggcaggcagggaatttggttcttgattgcagtgaa
attggtgatgatagaccgctttcgggttgttctttctcacgcgatggaaaacttcttgcc
acctgctctttgagtggagttgctaagttgtggtcaatgcctagggtaagcaaggtttct
gccttaaagggccacacagaacgtgcaactgatgttactttttctccggtgcatgatctt
ttagcaactgcttctgctgaccgaactgcaaagttgtggagctctgatggatctctcctg
aaaacatttgggggccatttggatcgccttgcacgtattgccttccatccttcagggaag
tatcttggtacaacaagcttcgataaaacatggagattgtgggacatagacactggcatg
gagttgcttctccaagaaggtcatagcaggagcgtctatggaattgccttccaccaagat
ggatctttagtagcatcctgtggacttgatgcacttgctcgtgtttgggatctgcgcact
gggagaagtattctggctttggaaggccatgtgaagccggttcttggtgctagtttttca
cccaatggctatcatctagccacaggtggtgaagataacacttgtcgtatatgggatttg
aggaagaaaaagtccctgtatatcataccagcccattcaaatcttatatcacaagttaaa
tttgagcctcaagagggatattacttggtcacttcttcttatgacatgactgcgaaggtt
tggtctggaagagattttaagcccgtcaaaagcttaccaggtcatgaagctaaagtcact
gcttcagatattagtgcagatgggcgatatattgtgacagtctctcatgatcgaactata
aagctatggactgctggtaacattgaacaggaaaatgatatggattggactgagggttga

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