Gossypium raimondii: 105762879
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Entry
105762879 CDS
T04129
Name
(RefSeq) protein CHROMATIN REMODELING 35
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
gra
Gossypium raimondii
Pathway
gra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105762879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105762879
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
105762879
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
105762879
NCBI-ProteinID:
XP_052481396
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Position
12:3746901..3754163
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AA seq
903 aa
AA seq
DB search
MEPPLPVLPTNYGISNEFCSKGCKRTRLSSDSKDYDSTISAANPQDGNEKTKPKVLPNAI
DFSDPLAYAKMLETFNTGGKYGSVTKDVETLISVNTQLVSKVLALHPRLSNMSADVEKTQ
RKEASKVPSRQLSHLSRNNFIDLEDDSIGNDITSSVSPVVILDSDDEDNRNPRSLHPVQE
IVLRKPSGNLIYKEIKVGEPNLFQFGVSMGNRVYKEEKISLTSEFDIKKDKGVYVGVEDD
VDAQMENEDDGLGDIWQEMSMALEFSKDAIEDTSNEHMLEDDEDCDHSFVLKDDLGYVCR
ICGVIQRGIETIIDIQYNKAKKSTNAYAFEPRNGKNRESIETGVKFSEDDLAVTGITAHP
RHMKQMKPHQVEGFNFLLSNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKYPHAKPL
VVLPKGILATWKKEFETWQVEDIPLLDFYTVKADNRSQQLDVLKKWVECKSILFLGYKQF
STIICDGGTSQTSISCREILLRAPSILILDEGHTPRNENTDVLQSLAKVQTARKVVLSGT
LYQNHVKEVFNILNLVRPKFLRLDTSKSVIKRIMSKVHIAGVKKQLKAGADAAFYDLVEH
TLQKDENFERKVSVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLSLGPRQKDEVHKL
RRFQRKFKISSVGSAVYLHPKLNSFSENSDTTDDKMDELLNTLDVREGVKAKFFLNMLNL
CESAGEKLLVFSQYLVPLKFLERLSVKVKGWQPGIQVFSITGESSSDHREWSMDRFNNSP
DAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVYTYRLVAG
DSPEEEDHSTCFKKELIAKMWFEWNKYCGNRDFDMETVNLNACNDLFLESQLLREDIRDL
YRR
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggagcctcccctgccggttttgcctacaaattacggaatctcaaacgaattctgttct
aaaggttgtaaaaggacaagattatcgagtgattcaaaagattatgacagcaccatctct
gctgcaaatcctcaagatggcaatgaaaagacaaaacctaaggtcttaccgaatgcaatt
gatttcagtgacccacttgcatatgctaaaatgcttgaaacttttaatactggtggtaaa
tatggaagtgttacaaaagatgtagaaacccttatttctgtgaatacacaattggtaagc
aaggtacttgctttgcatcctcgtctttcaaatatgtcggcggatgtggaaaagacccaa
aggaaagaggcttcaaaggtcccaagtcgacaactttcccatttgtcacgaaataatttt
atcgacttggaggatgactctattggaaatgacatcacatcatcggtgtcaccagtagtg
attctggattcagatgatgaagacaatagaaatcctagatctctacatccggttcaggaa
attgtattgaggaagccatctgggaatttaatctataaagagataaaggttggagagcct
aatttgtttcagtttggggtgtctatgggtaaccgagtttacaaggaagagaagattagt
ctaaccagtgaatttgatatcaagaaggataaaggtgtttatgttggtgttgaagacgat
gttgatgctcaaatggagaatgaagatgatggtctgggagatatttggcaggagatgtca
atggcattagaattctccaaggatgctattgaggatacttcaaacgagcacatgctggaa
gatgacgaagattgtgatcattcttttgtcttgaaggatgatcttggttatgtgtgtaga
atttgcggggtcattcagagaggaattgagactataattgacatccagtataacaaggcc
aaaaagagcacaaatgcttatgcatttgagcctcgaaatggcaaaaatagagagtcaatt
gaaactggagttaagttctctgaagatgatttagcagtaactggcataactgctcatcca
aggcatatgaagcaaatgaaacctcatcaagtagaaggctttaattttcttctgagcaat
ttggtggcagataaccctgggggctgcatcttggcacatgcccctggttcgggaaaaaca
tttatgataatcagcttcatgcagagtttcctagccaaatatccacatgctaaaccacta
gttgtgcttccaaaaggcatcttggctacatggaaaaaggagtttgaaacatggcaagta
gaggatattccactgcttgatttttatactgtgaaagcagataatagatctcagcaattg
gatgttttgaagaagtgggttgagtgcaaaagtatcctttttctgggatacaagcagttc
tctaccataatttgtgatggtggaaccagccagacttctatatcttgccgagagatactg
ctcagagcaccttcaattttaattttggatgaaggccacacaccgaggaatgagaacacc
gatgtgttacaatcccttgcaaaagtgcaaacagctcgaaaagtggtgctttcaggaact
ctttatcaaaatcatgtcaaagaggtatttaacatattgaaccttgttcgaccaaagttt
cttaggttggatacttcaaaatcagtaattaagcggataatgagcaaggtgcatatagct
ggggtgaagaagcagttaaaagctggagcagatgcagctttttatgatttggtggagcac
acactgcagaaagatgaaaattttgagagaaaagtctcagtcatccatgatctgcgtgag
atgaccagcaaagttcttcattactataaaggtgatttcttggatgagcttcctggactt
gttgatttcactgttgtgctgagtcttggtcctagacagaaggatgaagttcacaagtta
agaaggtttcaaaggaaattcaagatttcatctgttggtagtgctgtttatctccatcca
aaactgaattctttctctgagaactctgacacaacagatgataagatggatgagttgtta
aacacattagatgttagagagggcgtcaaagcaaaattttttcttaatatgttaaatttg
tgtgagtcagctggtgagaaactccttgtttttagtcagtatcttgtccccttgaaattt
ttagagagattgtccgtgaaagtgaagggttggcaaccaggaattcaggttttctcgatc
acgggtgaatcaagctctgatcatagggagtggtctatggatcgcttcaacaactctcct
gatgccaaagttttctttggatctataaaggcatgtggagagggaatttctttggtgggg
gcatcccgaattatcatcttggatgtccatcttaatccatctgtgacccgccaagcaata
ggtcgtgcatttcgccctggccaaaagaagaaagtgtacacgtatagattggttgcaggg
gattctcctgaggaggaggatcatagtacttgtttcaagaaggaattaattgcaaaaatg
tggtttgagtggaacaagtattgtggtaaccgagattttgatatggagactgttaatttg
aacgcgtgcaatgatctctttttggaaagtcagttgttaagggaagacattagggatctg
tacagaaggtag
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