Gossypium raimondii: 105763656
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Entry
105763656 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105763656
KO
K19026
spatacsin
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105763656
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
105763656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
ImpA_N
Motif
Other DBs
NCBI-GeneID:
105763656
NCBI-ProteinID:
XP_012437401
UniProt:
A0A0D2SRM9
LinkDB
All DBs
Position
12:complement(30255485..30283778)
Genome browser
AA seq
3225 aa
AA seq
DB search
MDRSASSEGPAILKLHKWGPSELPLNLSEYREAFISPTRELLLLLSYQCQALLLPLTTGG
SVDADVSESCHDKISQNLDLLACRSNLKEDIPSSSGSATDCDDVISQKHGFSRSNGYPFL
CDVNSLAWGMCGDTYNQHKDGSFRELLFVSGNQGVMVHAFSHPDNSSEPAAMLEGEFREG
KWVEWGPSSLPFKHIEAEKPVDLSFEATQNTIDKNIANGNLGVPDKISKKVGVDVLSETS
SSKRWLRSFFTKAETVEYEGSIWTRFPQKSSFPSSAKVVSFGIFSSNFPVLRFLCKENSS
SSGESCQETIRNLENGSHENVELGTSDVGSNTSYKCTRVFSSNSHQLIGFFLTLMSSASS
STSDGSERRTKNMIVIGRLDIWGIQWVSLVKLQQNVNTCPLNDWKDFHFSDDVLICLNAS
GLVFFYDAISGEHVAHLDILQTCRLSCSANLRESERSSLDDDMQSKSNYQHGDLFGRRTF
KRLLLASFTSHLAVVDENDIVYVIYGGDHLPDKYHSIEKLLPHYQHLGLGMLVGWDVGNS
DISHQRIYISSSNSCNLNSSSKKNEIVSFCDNTGNNILQKIHGWNRYGNGCLSDSVLNGF
SAASKVTDEKVHDSQIQFHLMRKIFLPTYRYSDDDCICFSPFGITRLIRRHNFKDSKNSK
IVHFDLHTDSVVQDDRFLNSGSKKFSLKGREEVSIGEAIGCTFQGCFYLVTDGGLSVVLP
SVSVSSNLLLIETVGFQQPNISTGIGCQAKNILGLEEPKMFWSPWKVEILDRVLLFEGPE
EADRLCLENGWDLRFSRMRRLQVALDYLKFDEAKQSLEMLVGVNLAEEGVLRLLFAAVYL
MFGKNGNDNEVSAASRLLKLATWFATKMIREYGLLQLKRDAFMFHGLDKPGVLALPSVLP
DKTQNEVGTSMKLREMAHFLEVIRNLQYQLRAKLKKPGQALVDRKESLTIVDPSSLQDEF
QFSTPSVDSLETLNQHELQIPALAFLPNNNEKLALVPNNSISTESYLNSEDPGEATALIR
HGVGSGKILPTENPKEMIARWKIDNLDLKTVVKDALLSGRLPLAVLQLHLHRSSEFTSDE
EPHDTFNEVSDIGRDIAYDLFLKGETELAIATLQRLGEDVEICLKQLLFGTVRKTLRVQI
AEEMRRYGYLGSVEWKLLERISLIERLYPSCCFWKTFHDRLKECMRVTSTLNSPEGVRVT
STLNSPEGVHLRLLDFFNNLKIECGEIDGVVLGAWANVNENSSDTVPDQDDVHAGYWAAA
AVWSKVWDQRTIDRIVLDQPFVMGVHVSWESQLEYHAYHNDWEEVFKLLDFIPTSVLSNG
SLQIALDGFQSASTIECNRFPDFGNYICSVEELDAVCMDIPDIKIFRSSSVFMCSTWLRM
LIEQELVKKLIFLKEYWEGTAELASLLARSGFITERYKISFEDNSIERSPDLDFSSRNGN
FRLDTVQALDKLLIHYCAQNNLPNLLDLYLDCLKLVFNDESLLSLQEATGDCHWARWLLL
SRFNGHEYDASFENTRSIMSHNLIHGGNLHGHEVDEVIHTIDDIAEGGGEMAALATLMYA
SAPIQNCLTSGSVNRHNSSTAQCTLENLRPTLQHYPTLWRTLVSGCFGQDTSFGFFHTGA
KNALADYLNWRDNIFFSTGRDTSLLQMLPCWFPKAVRRLVQLYVQGPLGWQSLSGLPTGE
SLLDRDVDFYINADEQAEINAISWEATIQKHVEEELYHSSLKETGLGLEHHLHRGRALAA
FNHLLISRVEKLKIEGRTNASGQTNVQSDVQTLLAPISEKEECLLSSIMPFAITHFEDNV
LVASCAFLLELCGLSASMLRVDVASLRRISLFYKSIQNKDNSRQLSSKGSAFQPATHDDS
IMESLARALADECMHGDNSRNSKQRGSLISVYGKQPSRALMLVLQHLEKASLPQLVEGKT
CGSWLLTGNGDGTELRSQQKAASQYWSLVTVFCQIHQLPLSTKYLAVLARDNDWVGFLCE
AQIGGYSFDTVFQVASKEFSDPRLKIHILTVLKSIQSKKKASSQSYLDKKSESPFLEENV
YMPVELFRVLADCEKQKNPGEALLLKAKDFSWSILAMIASCFPDVSPLSCLTVWLEITAA
RETKSIKVNDIATQMADNVAAAVEATNSLPGGSRSLSFHYNRRNPKRRWLLDTSCRAPLS
EASDSSTRIFSAEGSTAGEEKKVELSEQINVSSDFNEGPASLAKMVAVLCEQHLFLPLLR
AFELFLPSCSFLPFIRALQAFSQMRLSEASAHLGSFSARIKEEPSHLQTNIGRDGQVGMS
WISSTAIKAADATLSTCPSPYEKRCLLQLLAAADFGDGGFAAACYRRLYWKINLAEPSLR
KNDGLHLGNETLDDASLLTALEENMQWEQARNWARQLEASGGPWKSSFHQVTETQAESMV
AEWKEFLWDVPEERVALWGHCQTLFIRYSYPALQAGLFFLKHAEAVEKDLPARELLEMLL
LSLQWLSGMITQSNPVYPLHLLREIETRVWLLAVESEAQVKSEGEISLAGSSQNHLTGNI
SDIIDRTASIITKMDNHINSMKNRTVEKYDGRDLLHRNQALDSSSSAVAIGSSKTKRRAK
GYLPSRRPLVDLVDKSPEPEDGSNPPNLRNDVQLQDENLKIEISFSKWEERVGPRELERA
VLSLLEFGQISAAKQLQQKLSPGQMPSEFILVDTALKLAAMSTPTSEIPIAILDEELLSV
IQSYTPIDQHLIYPLQVLENLATVFIEGSGRGLCKRIIAVVKAANVLGLSFPEAFGKQPI
ELLQLLSLKAQESFEEAHLLVQTHVMPAASIAQILAESFLKGLLAAHRGGYMDSQKEEGP
APLLWRFSDFLKWAELCPSEPEIGHALMRLVITGQEIPLACEVELLILSHHFYKSSACLD
GVDVLVALAATRVEAYVSEGDFACLARLITGVGNFHALNFILGILIENGQLDLLLQKYST
AADTNTGTAEAVRGFRMAVLTSLKHFNPYDLDAFAMVYNHFDMKHETASLLESRAEQASL
QWFECYDRDQNEDLLESMRYFIEAAEVHSSIDAGNKTRRACAQASLVSLQIRIPDSKWLN
LSETNARRALVEQSRFQEALIVAEAYGLNQPTEWALVLWNQMLNPELTEEFVAEFVAVLP
LQPSMLSELARFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLKRTRDLRLR
LQLATSATGFADVVDACMKALDRVPDTAAPLVLRKGHGGAYLPLM
NT seq
9678 nt
NT seq
+upstream
nt +downstream
nt
atggatcgttctgccagtagtgagggtcctgctatactgaaattacataaatggggtccc
tccgagttgccactcaatctgtcagaatatcgtgaagcttttatatctccgacaagggag
ttactgttattgctttcataccagtgccaagctttactacttcctctgactacagggggt
tctgtggatgctgatgtttctgaaagttgtcatgacaagatttctcaaaatttagattta
ttagcttgtaggtccaatttaaaggaggatattccgtccagttctgggtctgcaacagat
tgtgatgatgttatttcccagaaacatggattctcaaggtctaatggttacccgtttctt
tgtgatgtgaactcattggcttgggggatgtgtggggatacctataatcagcacaaagat
ggttcatttagagaacttctttttgtgtctggcaatcaaggtgtgatggtgcatgccttt
tctcatcctgataatagcagtgagcctgcagcaatgttagagggtgagtttagggaaggg
aaatgggttgagtgggggccttcgtccttgccatttaagcatattgaggcagagaagcca
gttgatttgtcttttgaagcaactcagaatactatcgataaaaacatcgcaaatggaaat
ttaggagttccagacaagataagtaagaaagttggggttgatgtattgtcagaaacttcc
agttcaaagaggtggttgcgatcatttttcactaaagctgaaactgttgagtatgagggt
agcatttggactaggtttcctcagaaatcgtcatttccttcctctgcgaaagttgtttct
tttggcattttttctagtaatttcccagttctgagattcctttgtaaagagaattcttca
tcaagtggggagagctgccaagagactattagaaatctagaaaatggttcccatgaaaat
gttgagttgggtacatctgatgttggttccaacacttcatataaatgcacaagagtgttc
tctagcaattcacatcagttaattggattctttttaacactaatgagctctgcatcttct
agtactagtgatggaagtgagagaaggactaagaatatgattgtcattggcaggttggat
atttggggaattcagtgggtttctttagtgaagcttcagcaaaatgtgaatacatgccca
ctgaatgattggaaagactttcacttttctgatgatgttcttatttgcctcaatgcttct
ggcttagtgttcttttatgatgcaatttctggtgagcatgttgcacatcttgatatttta
cagacttgcaggttaagctgttctgcaaatttgcgtgaatcagaaaggtcatctctagat
gatgatatgcaaagcaagtcaaattatcagcatggtgatttatttggtagaagaacattt
aagaggctacttctcgcgtcatttacatctcatttggctgtggttgatgaaaatgatata
gtctatgtgatatatggtggtgaccatctaccggacaagtatcattcgattgaaaaattg
cttccacattatcaacatttaggacttgggatgttagttggttgggatgtagggaattct
gatattagccatcaaaggatatatattagttcatcaaattcttgtaatttaaatagctct
tccaaaaagaatgaaattgtttctttttgtgataatactggaaacaatattcttcagaaa
atccatggctggaaccgttacggaaatgggtgcctttctgattcagttttgaatggcttt
tctgctgcttcgaaagtaacagatgagaaagttcatgattcacaaatacagttccacctt
atgcgaaagatttttcttcccacatatagatatagtgatgatgactgtatttgtttttct
cctttcgggattactcggctcattagaaggcataatttcaaggatagcaagaattctaaa
attgttcattttgatttgcatacagactcagtagtccaagatgatagattcttgaattcg
ggaagcaaaaagttttccctcaaagggagagaagaagtttctattggagaagctattggt
tgtactttccagggttgtttttatttggtgactgatggtggtctctcggtggttctccct
tctgtttcagtttcatcaaatctccttctcattgaaaccgttggttttcagcaaccaaat
attagtactggcattggatgtcaagcaaaaaatattctgggactggaagagccaaaaatg
ttctggtcaccttggaaagttgaaattttggatagagtccttctgttcgaaggtcctgaa
gaggcagatcgtttatgcttggaaaatggatgggatctgaggttttcacggatgcgtcgg
ctacaagttgcattggattacttgaaatttgatgaagcaaagcaatctttagagatgctt
gtgggtgtcaacctggcagaagaaggggttttgagattactttttgctgcggtatatctt
atgtttgggaaaaatgggaatgataatgaggtttctgctgcatcaaggctactaaaatta
gctacctggtttgctaccaaaatgatacgtgaatatggattactccagcttaaaagggat
gcgttcatgtttcatggcttagataagcctggtgtccttgctcttccttcagtattacct
gacaaaacacaaaatgaagtaggaacttccatgaaacttcgggagatggctcattttttg
gaggttattcgtaatctgcaatatcaacttagagcaaagcttaaaaagccaggacaagca
ttggtggaccggaaggaatcattaactatcgtagatccaagttccttgcaggatgaattt
cagttttcaacaccttcagtggattcactggagacactgaatcaacatgagcttcagatt
cctgcattagcattcctacccaacaataatgagaaacttgctttggtgcccaacaattcc
ataagcaccgagtcttatttgaactcggaggatccaggtgaagcaactgccctcattcga
catggagtgggctcagggaaaattcttccaactgaaaatccaaaagagatgattgcacgt
tggaaaatagataatctggatttgaaaactgtggtaaaagatgcgttactctctggacgc
ctccctttagctgttctccaattgcatcttcatcgttcaagtgaattcacctctgatgaa
gagcctcatgataccttcaatgaagttagtgacattggaagagatattgcttatgaccta
tttttgaagggtgaaactgaacttgctatagctacattacaaaggctcggagaggatgtt
gaaatctgccttaagcagttgttatttggcacagtaaggaaaactctacgtgtacaaatt
gctgaggagatgaggagatatggttacctgggatcagttgagtggaaattattggagaga
atatcacttattgagcgactttatcctagctgttgtttctggaaaacgtttcatgaccgc
ctgaaagagtgcatgcgtgtcacatcaactttaaactcaccagaaggggttcgtgtcaca
tcaactttaaactcaccagaaggggttcatttgcgcctcttggactttttcaacaattta
aaaattgaatgcggtgagattgatggagtcgttttaggcgcatgggcaaatgttaatgaa
aattcatctgacactgtgcctgatcaagatgatgttcatgctggatactgggctgctgct
gctgtgtggtccaaagtctgggatcagagaaccattgatcgtatagtattggatcagcct
tttgtaatgggtgttcatgtatcatgggagtcacaattggaataccatgcatatcataat
gactgggaggaagtcttcaaactcttggattttattcctacatccgtgttatcaaatgga
agcctccaaatagctttggatggtttccagtctgcctcaaccattgaatgcaaccgattt
cctgactttggcaattatatttgctctgtcgaagaactggatgctgtgtgcatggatatt
ccagatattaagatttttaggtcgtcttccgtttttatgtgttctacgtggttaaggatg
ctgatagaacaggagcttgtaaagaaacttatatttttgaaagaatattgggagggcact
gcagagctagcttctcttcttgcacgatcaggcttcattactgagagatataagatttca
tttgaagataattccattgagagatccccagatctagatttctcaagcaggaatggaaat
tttcgcttagatactgttcaagctcttgataaattacttattcattattgcgcacaaaat
aacttaccaaatcttctggacctttaccttgattgtctcaagttggttttcaatgacgag
tcacttctttcattacaggaagctacaggagattgtcattgggcaagatggttgctctta
tcaaggtttaatggccatgaatatgatgcatcttttgaaaatactcgttcaataatgtct
cataatttaattcatggtggcaacctccatggtcatgaagtagatgaagtaattcacact
attgatgatattgcggaaggaggtggagagatggcagcattagcaactctaatgtatgct
tcagctccaatacaaaattgcttaactagtgggagtgttaacaggcataacagctccaca
gcgcagtgcacattagaaaatctgagacctactttgcagcactatcctacattgtggcgc
acacttgtatctggatgttttggacaagatacatcttttggtttcttccacactggagct
aaaaatgctttagcagattacctgaattggcgtgacaacatcttcttctctactggacgc
gatacttcgttactacagatgctaccttgttggttccctaaggctgtacggcggttggtc
cagctttatgtgcagggtcctcttggatggcaatcgctttcaggtttgcctactggagaa
tctttgttggatagagacgtcgatttttacataaatgctgatgaacaagctgagattaat
gctatctcctgggaagcaactatacaaaagcacgttgaagaggaactttatcactcttca
ctaaaggaaacaggacttggtcttgaacatcatttgcatcgtggccgtgcacttgcagct
tttaatcatcttcttatttcaagagttgaaaagttaaaaatagaagggagaaccaatgct
tctggacaaacaaatgttcaatcagatgtccaaactcttcttgcacctatatctgagaag
gaagagtgtcttctttcatctatcatgccctttgctattacccattttgaagacaacgtg
ttggtggcatcatgtgcttttctattagagctttgtggcttatcagccagcatgctgcga
gtagatgtagcttcattgagacggatatctttattttacaaatccattcaaaataaggat
aattctaggcaactttcctccaagggttcggctttccaacctgcaacacatgatgatagt
attatggagtctctagctcgagcactggctgatgaatgtatgcatggggataactctagg
aattctaagcaaaggggatctctaatttcagtttatggtaaacagccttctcgagctctt
atgcttgttctacagcatttagagaaggctagtcttccacagttagtggagggaaaaaca
tgtggatcttggctcttaactggtaatggtgatggaactgaattgagatctcaacaaaaa
gctgctagtcagtactggagtttagtaaccgtcttctgtcagatacatcagctgcccttg
agtacaaaatatcttgcagtattagcaagagacaatgattgggttggatttttgtgtgaa
gctcagattggaggatactcatttgacacagtgttccaagttgcatcaaaggaattcagc
gatcctcgtcttaaaattcatatactaacagttttgaaaagcatacagtcaaagaaaaag
gctagctcccaatcatacctggataagaagagtgaaagtccctttctagaggaaaatgta
tatatgcccgttgagctcttcagagttttagcagattgcgagaagcagaaaaaccctggc
gaggctttattgctaaaagcaaaagatttctcgtggtctattttggccatgattgcatca
tgttttccagacgtgtctccactgtcatgcttaacagtttggttggaaataactgcagcc
agggaaactaaatccatcaaggtgaatgacatagctacccagatggcagataatgttgca
gcagcagtggaagctaccaattccttgccaggtggcagcagatcactgtcatttcattac
aataggcggaatccaaaacgaaggtggcttttggacacttcatgcagggctcccttgtct
gaggcatctgatagttcaacaagaatattttctgctgagggcagtactgctggggaagaa
aaaaaggttgaactcagtgagcagattaatgtttcaagtgattttaacgaaggtccagct
tctctagccaagatggttgcagtgctttgtgaacagcacttgtttctgcctttactaaga
gcatttgaattgttcctcccttcatgttccttcctgccatttatccgggctcttcaggca
ttttcgcaaatgcgtctgtctgaagcttcagcacatcttggttctttttctgccagaatt
aaggaagagccaagtcatttacagacaaatattggaagagatgggcaggttggaatgtca
tggattagttccactgctataaaagctgctgatgctaccctttcaacttgtccatctcct
tatgaaaaaaggtgcttactgcagcttcttgctgctgctgactttggagatggaggcttt
gcagctgcttgctatcgacgactttattggaaaataaatctagcagagccttctttgcgt
aaaaatgatggactgcaccttgggaatgaaactctagatgatgcttccctcctaacagcg
ctagaagagaacatgcagtgggagcaagcacgcaactgggcaaggcagttggaggctagc
ggcggaccttggaaatctagttttcaccaggttactgaaactcaggctgaatccatggta
gctgaatggaaagaattcctttgggatgtccctgaagagagagttgctttatggggtcac
tgccagactttattcattagatattcctatcctgcgttacaggcagggttgtttttcctt
aagcatgcagaagcagtggagaaagatcttccagctagagagcttcttgagatgttgttg
ctttctcttcaatggttaagtgggatgataacccagtccaacccagtttatcctttacat
cttctgcgagaaattgagactagagtatggcttttagccgtagaatctgaagctcaagtg
aaaagtgaaggagaaatcagtttagcaggttctagccagaatcatctcacagggaatatt
tccgacattatcgatcgaactgctagcataataacaaagatggacaatcatattaattca
atgaagaatagaactgtagagaaatatgatggtagggatctactccacagaaaccaagca
ttggactccagctcttctgctgtagcaattgggagttcaaagacaaaacgaagggccaaa
ggctatctgccttcaaggaggccattggtggacctagtagataaaagccctgagccagaa
gatggttccaatcctcccaatcttagaaatgatgttcagttgcaagatgaaaacttaaaa
attgaaatatctttttctaagtgggaggagagggttgggcccagagagcttgaaagggct
gttctatccttactagagtttggacaaatatcggctgccaagcaactccaacagaagctg
tcacctggccagatgccttctgaattcatactcgtggatactgctctgaaacttgctgca
atgtccactcctaccagtgaaataccaatagcaatacttgatgaggaacttctctctgtt
attcagtcatatacaccaattgatcagcatctcatctacccactgcaggtcttggagaat
ttagcaactgttttcatcgaaggtagtggacgtgggttatgcaagagaataattgcagta
gtcaaagctgcaaacgtcttgggtctttcatttccagaggcatttggcaaacagcctatc
gaattgctacagctactttctcttaaagctcaggagtcttttgaggaagcacatctcctt
gtgcaaactcatgttatgccagctgctagtatcgctcaaattcttgcagagtcctttcta
aagggtttattggctgctcatcgtgggggatatatggattctcagaaagaggaagggcca
gctcctcttttgtggagattttcagatttcttgaagtgggctgaactgtgtccttctgaa
cctgaaattggccatgcattaatgcgtttagtgattactggacaagaaataccacttgcc
tgtgaggttgagcttcttattctttcacaccatttctacaaatcatcagcatgccttgat
ggggttgatgttcttgtagcccttgctgcaaccagggttgaagcttatgtttccgagggt
gattttgcatgtttggctcgcttgataactggagtcggaaacttccatgcccttaatttt
attcttggcattctcatagaaaatggtcaattggatctacttcttcagaagtattccact
gctgcagacacaaatactggcactgctgaggctgtcagaggatttcgaatggctgttctg
acgtctttgaagcattttaatccttatgaccttgatgcatttgctatggtttataatcat
tttgacatgaagcatgaaacagcttctctgctggagtcacgagcagagcaagcttccctg
cagtggtttgaatgctatgacagagaccagaatgaagatctcctggaatcaatgcgctat
ttcattgaagctgctgaagttcactcttcaattgatgctggcaacaaaacacgcagggct
tgtgcccaggcttctcttgtctcgcttcaaatacgcattccggattctaaatggctcaac
ctatctgaaaccaatgctaggcgagctctagttgagcaatctcgattccaagaggctctt
attgttgcagaagcctatggtcttaatcagccgacagaatgggccctagtcctttggaat
cagatgctcaatccagaactcacagaagagtttgtggctgaatttgtggctgtgcttcca
cttcagccatctatgcttagcgaactggcaagattctacagggccgaggtagctgccaga
ggtgatcaatctcaattctcggtttggctcactggaggagggttaccagcagaatgggcc
aaataccttgggagatcatttagatgcttgttgaagaggactagggatctgcggctacgg
ttgcaactggctacttcagctactgggtttgctgatgtggtggatgcctgcatgaaggcc
ttggatcgggttcctgatactgcagcaccacttgtcttgaggaaagggcatggtggggct
tacctcccactaatgtga
DBGET
integrated database retrieval system
