Gossypium raimondii: 105763964
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Entry
105763964 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105763964
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
gra
Gossypium raimondii
Pathway
gra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
105763964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gra04131
]
105763964
Membrane trafficking [BR:
gra04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
105763964
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
Beta-prop_WDR5
zf_RING_Vps8
Beta-prop_EML
WD40_Gbeta
WD40
ANAPC4_WD40
WDR55
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_EML_2
zf-RING_Vps41
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
105763964
NCBI-ProteinID:
XP_012437821
UniProt:
A0A0D2TTT2
LinkDB
All DBs
Position
12:38070466..38081031
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AA seq
1932 aa
AA seq
DB search
MEADLDTLLDSHFSDSDDDSNSIVPHRTIDEILNDSDASTSSSSPSSPLSSHHRSDNRLA
RSNTVPQEFVELLEERDALSEGPAESSKTSPFKRIGDPVWRVSSSSSSKQLPTLFGGVKS
NAKPGAALAAAAAASRSVPTPHAAAIKSRRAVSGGVLQRVVGSDDQDVSSLNGESIGISS
KSSVSGEKLEIDDYTSDNKMGDFQSADAHQNSEANESKDKESEAERVIERIDSSSKLDFD
DSLNKEVTVLGSGEVLDNEIDPVSVSENSLVLDANDSYEKSVLSLPSVDQERNISKDLER
VGLERKNVASDMPSYEDGEENASGGDDKSSMSDISELVEERLEQLESEMMSKRVESNARA
TMKPLELAEELEKKQASTGLHWEEGAAAQPMRLEGVRRGSTTLGYFDVDASNIITRTLSS
QAFRRDHGSPQVLAVHLNFIAVGMTKGVIILVPSKYSTHHADSMDPKMVILGLQGDRSLA
PVTSMCFNQPGDLLLAGYGDGHVTVWDVQRASATKVIAGEHNAPVIHTLFLGQDSQVTRQ
FKAVTGDSKGLVLLHAFSVVPLLNRFSIKTQCLLDGQKTGTVLSASPLLFDGSCGSTSVT
FQGNATSTSSIGSKMGGVVGGDAGWKLFAEGSSMAEEGVVIFVTYQTALVVRLTPTLEVY
AQLSRPDGVREGSMPYTAWTCMAQPCGSSSENSPTETAERTSLLALAWDRKVQVAKLVKS
DLKVYGKWSLDSSAIALAWLDDQMMVVLTMTGKLNLFARDGTLIHQTSFAVDGLGGDDLI
TYHTHFVNIFGNPEKAYHNCVSVRGASVYILGPMHLTVCRLLPWKERIQVLRKAGDWMGA
LNMAMTLYDGQAHGVIDLPRNLDAVQETIMPYLVELLLSYVDEVFSYISVALGNQIGKVE
QPDDRESRNGSVHSEIKEQFTRVGGVAVEFCVHIRRTDILFDEIFSKFVAVQQRDTFLEL
LEPYILKDMLGCLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVILCREHGL
YGALVYLFNKGLDDFRAPLEELLVVLRNSQGEIASGLGYRMLVYLKYCFTGLAFPPGQGT
LPPSRLLSLRTELLQFLLEVSDCQDKKLASTSAFEGAYLNLYYLLELDTEATLDVLKCAF
IEEKSPEPDSSFSESGDANEEAKKEKDLMAESETMLVQKTIGALVHVLGKNTLQTDGLAS
YDDSEFIEAWPTKKDMGYLFEFIACYVACGRAKIPKTVLNQILEYLTSVNDSSQSVSTMS
TERSKRREKQLLALLEVVPETDWDQSYVLQLCENACFYQVCALIHTIRHQYLAALDSYMK
DVEEPIHAFAFINNMLMQLSNGDFTIFRSAVISRIPELVNLSRELTLFLIVDHFKEESSH
ILSELNSHPKSLFLYLKTVIEVHLSGTFNFSCLREEKIVDVLSEKRGKESEKVLKAYLEN
LSNFPKYLRHNPLHVTDGMIELYLELLCQFERDSVLKFLETFDSYRVEHCLRLCQEHGII
DAAAFLLERVGDVGSALLLTLSSLNDKFTELDTAIGNAVSKVSLSRSGSMEYFNSVLKMK
EVNDIRNLLQACIELCQRNTPRLNPEESEMLWFRLLDSFCEPLMGSYCNDRVSEKENHAG
LVGSLGSQDEEECIIKWRIPKSHKGGHILRKLFSQFIKEIVEGMIGYVRLPTIMSKLLSD
NVGQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYTMSLLKKGASHGYAPRSLLC
CICNSLLTKTSSSFRVRVFSCGHATHIQCELLENESSTRGLSSGCPVCLPKKNTHKSRSK
SAFTENGLVSSLPSRSQPAQGSTLHPHENDTLDNSYGLQQISRFEILSNLQKDQRLAQIE
NLPQLRLAPPAIYHEKVKKGSGVLAAGESSSQVGGIQKPNKNKQLKDLKLKGSSLRFPLK
SSIFGKEKTSKP
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgacctcgacacgttacttgactcacacttctccgattccgacgacgattcc
aactcaatcgttcctcaccgtaccatcgatgaaatcctcaacgattccgatgcatccacg
tcatcttcttcgccttcatcccctctctcttctcatcaccgttccgataaccgccttgcc
cggtcgaataccgttccgcaagaattcgtggaattgctagaggaaagagatgctctttca
gaaggaccggcggaatcgtcgaagactagtccgttcaagcggattggtgatccggtctgg
agggtttcgtcatcatcttcttcgaaacagcttccgacgctgtttggtggagtgaaatcc
aatgcgaaaccaggggctgcgctcgcggctgcggctgcggcgtcgaggtcggttccgact
ccacatgcggctgctatcaagtcgaggagggcggtaagtggtggggttcttcagagggtt
gtaggtagtgatgatcaggatgttagctcattgaatggggaatcgattgggattagctcg
aaatcaagcgtttcaggtgaaaaattagaaattgatgattatactagtgataataaaatg
ggcgattttcaatctgctgatgcccatcaaaatagtgaggctaatgagagtaaagataag
gaaagtgaagctgagagagtaattgaacgaattgacagctcttctaagcttgattttgat
gacagcttgaataaagaagttacagttttgggttcgggtgaagttttagataatgaaatt
gaccctgtttctgtgtctgagaattctctggttcttgatgccaatgattcatatgaaaag
agtgttttgtctttgcctagcgttgatcaggagagaaatataagtaaggacttggagagg
gtgggtttggaaagaaagaacgtagcaagtgatatgcccagttacgaagatggtgaggaa
aatgctagtggtggtgatgataaaagttcaatgagtgatatttcagagcttgtagaggag
agactggagcaactagagagtgagatgatgagtaaaagggtggaaagcaatgcacgtgct
acaatgaagccgcttgaactggctgaggagcttgagaagaaacaggcttctactggtttg
cattgggaggagggtgcagctgctcaacccatgaggcttgaaggtgttaggaggggttca
accacgttgggatactttgatgttgatgctagcaatataatcactcggactctttcatca
caggcattcaggcgtgatcatggctctcctcaagttttggcagttcatctgaacttcatt
gccgtgggaatgactaaaggagtcatcatcttagtccccagtaaatattccactcatcat
gccgacagcatggatcctaagatggtgatacttggtttgcaaggggatcggtcccttgcc
cctgtaacatccatgtgcttcaatcagccaggagaccttctcttagctggctatggtgat
ggccatgtcacagtttgggatgttcagagggcatcagcaacaaaagttattgctggagaa
cataatgcaccagtgatacatacattatttctggggcaggattctcaagttactcgccag
tttaaagccgttacaggtgatagtaaaggcttggtgctgttacatgctttctcagttgtt
cccttgcttaataggttctcaatcaaaacacagtgtcttcttgatggacaaaaaacgggc
accgtattgtcagcttccccacttctttttgacggttcatgtgggagcacttcagtgacc
tttcaagggaatgctacttctactagcagtattggtagcaagatgggaggtgtagttggg
ggagatgcaggttggaaactcttcgctgaaggctcttctatggctgaagaaggtgtggtc
atatttgtcacctatcaaactgctctggtggtaaggcttactccaacattagaagtctat
gcgcaactttctaggccggatggtgtgcgggagggttccatgccatacactgcatggaca
tgtatggcgcagccttgtggatcttcatcagaaaattcaccgacagaaacagcagagaga
acttcgcttcttgcacttgcatgggatcggaaagttcaggttgcaaaattggttaaatca
gacctaaaagtatatgggaaatggtctcttgacagttcagccattgctttggcttggttg
gatgatcagatgatggtggttcttacaatgacaggaaaactcaacttgtttgctagggat
ggaaccctgattcaccaaacaagttttgctgtagatggcttgggaggagatgatctcatt
acatatcatactcactttgttaatatctttggaaaccctgaaaaagcttatcataattgt
gtatctgtaagaggagcatctgtatatatactaggacctatgcatcttactgtctgccgt
ctccttccatggaaggaacgaattcaggttctacggaaagccggtgactggatgggagct
ttgaacatggcaatgacactttatgatggtcaagcccatggtgttattgaccttcctaga
aacctggatgcggtgcaggagaccataatgccctatcttgtagagttgcttttgtcgtat
gtggatgaagtgttttcctatatttctgtggcattaggtaaccaaattggtaaggtggag
cagccagatgaccgggaaagtagaaatggttccgtgcactcagaaataaaagagcaattc
acccgtgttggtggtgttgctgttgaattttgtgtccatatcaggaggactgacattctt
tttgatgaaattttctccaaattcgtggctgttcagcaaagagatacatttttagagctt
ctggagccatacatattgaaggacatgcttggatgtttgcctcctgagataatgcaagcg
ctggtagaacattacagcagcaaaggatggttgcagcgagttgaacagtgtgttctccac
atggatatttcgtccttggacttcaatcaggttgtcattttatgtcgggagcatggttta
tatggtgctctggtgtatcttttcaacaaaggattagatgatttcagggcacctttagag
gagctgttagtagttttacgaaatagtcaaggagaaattgcttctggccttgggtacagg
atgcttgtttacttgaagtactgctttacaggtcttgcttttccaccaggccaagggact
cttccaccatcacgcttgttgtctcttaggactgaacttctgcagtttttgttagaggtt
tctgattgtcaggataaaaaattagcttcaacttcggcttttgaaggggcataccttaac
ctgtattatctcttagagttggatactgaggccactttagatgttctcaaatgtgctttc
atagaagagaaatcccctgaaccggactcctctttttctgaatctggagatgcaaatgag
gaagctaaaaaggagaaagatttgatggctgaatctgaaacaatgttggttcagaaaacc
attggtgctctggttcatgttcttggtaagaatacccttcaaacagatgggcttgcaagc
tatgatgactctgaatttatcgaagcatggcctacaaaaaaggacatgggatatctgttt
gagtttatcgcatgctatgttgcatgtggaagagctaaaatcccaaaaactgttctaaat
cagattttggaatacttgacttcagtaaatgacagttcacaaagtgtttctaccatgagt
actgaaagatccaaaagaagagagaagcaattactggcacttttggaggtagtgccagaa
actgattgggaccaatcttatgtgctacagttatgtgagaatgcatgcttttaccaggtt
tgcgccttaattcataccatcagacatcagtatcttgctgctctcgacagctatatgaaa
gatgtggaagagccaattcatgccttcgcatttatcaacaacatgttaatgcagttgagc
aatggagattttactattttcagatcagcagtcatctctcgaattccagagctggttaat
ttaagcagagagttgacattattcttaattgttgaccattttaaagaagaaagttctcat
atcctatctgaacttaactctcatccaaaaagccttttcctttacttaaagacggtcatt
gaggttcacttatcaggcaccttcaacttctcttgtttaagagaagaaaagattgtagat
gtcttgagtgaaaaaagggggaaagaatcagaaaaagtccttaaagcctacttggaaaat
ttgtctaatttccccaagtatctgcgacataatcctcttcatgtaactgatggtatgatt
gagctttatctggagttattatgtcagtttgaacgggattcagtgctcaagttcttggaa
acttttgatagctatcgagttgaacactgtctccgcctgtgccaggaacatggaatcata
gatgcagctgcatttttattagaaagggttggtgatgttggtagtgctcttttgcttaca
ctttctagccttaatgataaatttacagagcttgatactgccatcggaaatgcggtctct
aaggtgtctttgagtagatctggtagcatggagtatttcaactctgttttgaaaatgaag
gaggtgaatgacatacgcaatttattgcaagcctgtattgaattatgccaacggaatacc
cctcgtttgaatccagaagagtctgagatgctttggtttagattacttgactcattttgt
gaacctttgatgggttcgtactgcaatgatagggtatctgagaaggaaaatcatgcggga
ctggttgggtcattgggctctcaagatgaagaagaatgcataatcaagtggaggataccg
aaatctcacaaaggtggtcatatattgaggaaattgttctctcaattcatcaaagagatt
gttgagggaatgataggatatgttcgtcttccaactattatgtcaaaactcctatctgat
aatgtcggtcaggaatttggagattttaagcttaccatattgggaatgctcggaacttat
ggctttgaaagaagaattctggatactgcaaaatctttgatcgaggatgacacattttac
acaatgagcttactgaagaagggagcttctcatggatatgcacctcgaagtttattatgt
tgtatatgcaacagccttcttaccaagacctcttctagctttcgtgttcgggttttcagt
tgtggtcacgcaactcatattcaatgtgagcttctggaaaacgagtcatcaactagaggc
ttgtcgtctggatgccctgtttgtttgcccaagaaaaacactcacaaatctagaagtaaa
tctgcttttacagagaatggtttagttagttcgttgccctcaagatcccaaccagcacaa
ggatcaacattacaccctcacgaaaacgacacactagataactcttacggccttcaacaa
atatcgcggtttgaaatattaagtaaccttcaaaaagaccagagattagcccagatagaa
aatttaccacagttgaggcttgcaccgccggcgatttatcacgaaaaagtgaagaaagga
agtggagtattagcagcaggggaaagcagcagtcaagtaggtggaatccaaaaaccaaac
aaaaacaagcaactcaaggatctaaaattaaagggatcatctctcagattcccactaaaa
tcaagtatttttggcaaggagaaaacaagcaaaccatag
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