Gossypium raimondii: 105763978
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Entry
105763978 CDS
T04129
Name
(RefSeq) protein LATE ELONGATED HYPOCOTYL isoform X1
KO
K12133
MYB-related transcription factor LHY
Organism
gra
Gossypium raimondii
Pathway
gra04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
105763978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gra03000
]
105763978
Transcription factors [BR:
gra03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-factors
105763978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_7
Myb_DNA-bind_6
A_deaminase
Motif
Other DBs
NCBI-GeneID:
105763978
NCBI-ProteinID:
XP_012437833
LinkDB
All DBs
Position
12:complement(38213299..38221600)
Genome browser
AA seq
766 aa
AA seq
DB search
MDTYSSGEELVTKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
IRSHAQKFFSKLEKEALAKGVPIGQALDIEIPPPRPKRKPNNPYPRKTGAATTIQDGAKD
GKSETPISSSRCKQVLDLEKEPLPERPNGDEKSTNLKENQDESCSGVFTLLHEANCSSAS
SMNKNFIPASAALKSSCTFREFVPSPKEVVNHDKHVFYVTLELKEIYKAYILNVQQKIHD
NGTSKASNLEYSCTSYDKPAQVQRKDDLDGALCADEMQAAQNYPRHVSVHVLDGSLRTCA
QNPSLDMSFQDSVFHPMGDVHGPNLSANLAASAATEHQNNALRSTQQALPPFHTPFMHLR
PNQQDYRSFLHVSSTFSSLIVSTLLQNPAAHAAASFAARFWPYANIESSGDSPACGLGGF
PSRQINSAPSMAAIAAATVAAATAWWAAHGLFPVCAPLHTGFTCFPASTAAVPPMENGQP
PAAKTEQKGKTDQALSLQVEQLDPENSEALQGQHSSSKSPTSSSSDCEERGDAKVNTGVK
ATDDEMAAEVIEPQDANKTKNKKQVDRSSCGSNTPSSSEVETDALEKHEKDKEDSKGADP
NHPQVECSRRSSRSNSNLSDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDGKSKGQQKE
NIGEDKQNPAEEDEEISTLDLNSKTLGSCSDHQVTVKNALSRDKNTTEEGLLTIGLGHSK
LKAGRTGFKPYKRCSVEAKENRVMNTGSQGEEKGPKRVRLEGEAST
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggacacatactcttctggggaagaactcgttactaagactaggaagccttatactatt
accaaacaacgtgaaagatggactgaggaggagcataataggttcctagaggctttgaag
ctctatggacgagcttggcaacgcattgaagaacacataggaacaaagactgctgtgcag
atcaggagtcatgctcaaaaattcttttcaaagttggagaaggaggcacttgctaaaggt
gtaccaataggtcaagctcttgacatagagattccacctccgcgccctaaaagaaaacca
aacaatccttatcctcgaaaaaccggtgctgctaccacaattcaggatggagctaaggat
ggaaaatctgaaacaccgatatcttcttcacgttgcaagcaagtgttggacttggagaaa
gaaccacttccagagagacctaatggagatgaaaagtctacaaatctgaaagaaaatcaa
gacgagagttgctctggggtttttacccttctccacgaagcaaattgctcctctgcttct
tccatgaataagaattttataccagcgtcagcagcactcaaaagctcttgcacatttagg
gagtttgtaccttctccaaaagaggtagtaaatcatgacaaacatgtattctatgtcact
cttgaacttaaagaaatttataaagcttatatacttaatgtccaacagaaaattcatgat
aatggtacaagtaaggcctcaaacctggagtattcttgcacttcatatgataaaccagct
caagtccagagaaaagatgatttggatggtgctttatgtgcagatgaaatgcaagccgct
caaaattatcctcgacatgtttctgtgcatgtcctagatggaagcctgagaacatgtgct
caaaatccttccctggatatgtcatttcaggattctgtatttcaccctatgggcgatgtt
catggacctaacctgtctgcaaatctagctgcatctgcagctactgaacatcagaataat
gctctgagatcaactcagcaggcactgccaccttttcacactccctttatgcatcttcgc
ccaaatcaacaggactatcgatcatttctacatgtctcctccactttttccagtctcatt
gtatctacattgttacagaatccagctgcccatgctgcagcaagctttgcagcaagattt
tggccttatgcgaatattgaaagctctggcgattctcctgcatgcggcttaggaggtttc
ccatctagacaaatcaactctgctccaagtatggctgcaattgctgctgcaactgtagca
gctgcaactgcatggtgggccgcccatggactgtttcctgtatgtgctcctctgcataca
ggctttacctgttttcctgcatccactgctgcagttccaccaatggagaatggtcaacct
ccagctgccaagacagaacaaaagggtaaaactgatcaagctctatctctgcaggttgag
caactagaccccgaaaactctgaagctttgcaaggtcagcattcatcatctaaatcacct
acttcatcatcatcggactgtgaagagagaggagatgcaaaagtgaatactggagtgaaa
gctaccgatgatgagatggctgctgaagtaattgagcctcaggatgcaaataaaacaaag
aacaaaaaacaagttgaccggtcctcatgtggctccaacactccttcaagcagtgaggta
gagacagatgcgttagaaaaacatgaaaaagacaaggaagattcaaaaggagctgaccca
aatcatccacaagttgaatgtagccgtcgtagtagtagaagcaatagcaacctgagtgat
tcttggaaggaggtatctgaagaggggcggctagcttttcaagccctcttctcccgagag
gtactcccgcaaagcttttctcctccacatgatggcaagagcaaggggcagcaaaaggaa
aatataggtgaagacaagcaaaatccagctgaggaagatgaagaaatatcaactttagat
ctcaacagcaagacattgggttcttgttctgatcatcaagtaactgtgaaaaatgcatta
tcaagagacaagaacactacagaagagggcctgctgactattggattaggacattcaaaa
ctaaaagctggccgaactggatttaaaccttacaaaaggtgttctgtggaagccaaagaa
aacagagtgatgaacaccggcagtcaaggtgaagagaaaggtcccaagagggtacgcttg
gaaggggaagcttcaacttga
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