Gossypium raimondii: 105764042
Help
Entry
105764042 CDS
T04129
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105764042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105764042
03009 Ribosome biogenesis [BR:
gra03009
]
105764042
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105764042
Spliceosome [BR:
gra03041
]
Complex A
U2 snRNP components
U2 related factors
105764042
Complex B
105764042
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105764042
Ribosome biogenesis [BR:
gra03009
]
Eukaryotic type
90S particles
Helicases
105764042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
ResIII
SRP54
T2SSE
FtsK_SpoIIIE
AAA_7
AAA_30
Flavi_DEAD
AAA_33
TsaE
NACHT
Motif
Other DBs
NCBI-GeneID:
105764042
NCBI-ProteinID:
XP_012437945
UniProt:
A0A0D2T5Q3
LinkDB
All DBs
Position
12:complement(39259612..39263170)
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVVDEPSAKIAKSNGLGLTGMNANSSINKWNGRPYSQRYYDILEKRKT
LPVWQQKEEFLQVLRANQTLVLVGETGSGKTTQIPQFVLDAVDIETPDKRRKMMIACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEVG
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLILKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVAAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRALKAADNVRQQLVRIMSRFNL
KLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLENFPQCEAKRVLEKLYRKKEKDREE
SRNRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaaaaggaaggtgagcttgtttgatgttgtggacgagccgtcggct
aagatcgcgaaatcgaacggtttaggtttaacggggatgaacgccaacagctcgatcaac
aagtggaatggacggccttattctcaaaggtattacgatattttggagaagaggaaaacc
ctccccgtttggcaacaaaaagaagagtttttgcaagtattgagggcgaatcaaaccctt
gtcttggtcggtgaaaccggtagcggtaaaactactcagattcctcagtttgtactggac
gccgttgatatagaaactccggataaacgtaggaaaatgatgattgcttgtacccagcct
cgaagagtggctgccatgtctgtttcacgtcgtgttgctgaagaaatggatgtgactatt
ggagaggaggtgggttatagtattcgtttcgaggattgcagtagtgcaaggactgttttg
aagtatttaacagatggtatgcttttaagggaagcgatgacagatcctcttttagaaaga
tataaagtgattattctcgatgaagctcatgaaagaactttggctacggatgtgctgttt
gggcttctgaaagaagttttaaggaatcgacctgaccttaagcttgttgttatgagtgct
acactagaggctgaaaagtttcagggttattttaatggtgcaccacttatgaaggttcca
ggtaggcttcaccctgtggagatattctacactcaggaacctgaaagggattacttggag
gctgcgatacggactgttgtgcagatacacatgtgtgaacctcctggtgatatacttgtt
ttcctaaccggagaggaggagatcgaagatgcctgtcgcaaaataacgaaagaagtagga
aacatgggggatcaagtaggtcctgttaaagtagtgcctctatattcaactcttccacca
gcaatgcaacagaagatttttgagcctgctccacctcctgtgaaagagggtggccctcct
ggaaggaagattgtggtgtctacaaacattgccgaaacttccttgactattgatggcatt
gtttatgttattgaccctgggttttctaaacaaaaagtttataacccacgagtgcgtgtt
gagtccttattggtatctcctatatcaaaggcaagtgcacatcaaagatctggacgtgct
ggaagaacacaacctgggaaatgcttcaggctctacactgaaaagagttttaataatgat
ctgcagccgcagacctatcctgaaatattacgttcaaaccttgcaaatacagttctcatc
ttgaagaaactgggaatcgatgatctggttcattttgattttatggacccacctgctccg
gagacattgatgcgtgcattggaagtgttgaattacttgggagcattggatgatgagggt
aacttaacaaagctgggtgagatcatgagtgaattccccttggatcctcaaatgtcaaag
atgctcgtagttagttctgagttcaactgttcaaatgagattctttcagttgccgccatg
ctttcagtacccaattgctttgtacggcctagggaggcacaaaaagctgcagatgaagca
aaagctcggtttgggcatatcgatggtgatcatctcacacttttgaacgtgtaccatgct
tacaaacaaaacaacgaggatcaatcttggtgctatgagaatttcatcaaccatagagcg
ctgaaggctgctgataatgttagacaacagctcgtgcgcattatgtccaggtttaatctc
aagctgtgcagcactgatttcaacagccgtgactactatgtcaacattagaaaggccatg
cttgctgggtatttcatgcaggtagctcatctggagcgcacggggcactacttgacagtt
aaagacaaccaggtggtgcacttgcatccatcaaattgcctggatcacaagccagagtgg
gtcatctacaacgagtatgtcctgacaagccggaattttattcgtactgtgacagatatt
cgtggtgaatggttagtcgatatagcaccacattattatgatctcgaaaacttcccacag
tgtgaggctaagcgagtcctcgaaaagctttacagaaaaaaggagaaggatcgggaggag
agtcgaaacaggagatga
DBGET
integrated database retrieval system
