Gossypium raimondii: 105764125
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Entry
105764125 CDS
T04129
Name
(RefSeq) DNA mismatch repair protein PMS1
KO
K10858
DNA mismatch repair protein PMS2
Organism
gra
Gossypium raimondii
Pathway
gra03430
Mismatch repair
gra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105764125
03460 Fanconi anemia pathway
105764125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gra03400
]
105764125
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
105764125
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
105764125
NCBI-ProteinID:
XP_012438053
UniProt:
A0A0D2U395
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Position
12:complement(40422801..40429559)
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AA seq
967 aa
AA seq
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MEGSPQSKSPVIKPINKGVVHRICSGQVILDLSSAVKELVENSLDAGATSIEIALKEYGE
EWFQVIDNGCGISPANFKVVALKHHTSKLADFPDLESLTTFGFRGEALSSLCALGNLTIE
TRTKNEPVAMHLTFDHSGLLIAEKKTARQIGTTVTVKKLFSNLPVRSKEFHRNIRKEYGK
LISLLNAYALTAKGVRLVCSNTSRKNLKSVVIKTQGSGSLKDSIIQVFGMNMFNCLEPVS
ICISDDCKIEGFLSKSGQGSGRSMGDRQYFFVNGRPVDMPKVSKLVNEIYKGANSKQYPV
AVMNFIIPTRACDVNVTPDKRKVFFSDESMILQSLREGLQQIYSSSNASYIVNGVDDTNE
AGSFEFCSSPEKSNILSEQSPPAGVNLKVSMREHSPEDKTSFRTVNINAQSLQLLEGSVS
SDLENIPTLGVQGTNMVDGVFEANAGQLTSHMDDTAKKDLSGGLTLRHHEDSLKDFTLQV
RRMNKIDGFMESNDGGLTTHMNSIASKNSSSPSTSIGKGNSVSRDCSSHSGYVQSSLNKF
VTVNKRKHESISTVLSEVPVLRNQSLHYQSKNSNLNLPALGLRDQVDDSSKLNENEPRKF
LRAHSILDETENPSSPSGNTSGGKPGEESENHEKAVPSAGTELIDLFHKNPEDVPEKAST
VPTSESLSSALIVDAPVPPSDKKICSTLEFRFEDLLTKRRQRMSRVLYTGYRFLGMKKTR
CYTAATLELSQPQNVEQKVQALDAATRELEKLFKKEDFSRMKVVGQFNLGFIIGKLDEDL
FIVDQHAADEKYNFEHLAQSTIFNQQPLLRPLRLELSPEEEVVASMHMDIIRKNGFILEE
DPHAPPGHHFNLRAVPFSKNITFGVEDVKDLISTLSDSQGECSIIGSYKMDTSDSVCPTR
VRAMLASRACRSSVMVGDPLGRNEMQKIVEHLADLKSPWNCPHGRPTMRHLVDLTTLSKE
PDEDTSC
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggaaggatcgcctcaatctaagtcccctgtaattaagcccattaacaaaggcgtcgtt
cacagaatctgctccggtcaagtcatattagacctctcctccgccgttaaggaactcgtt
gagaacagcctcgacgctggcgccaccagtattgaaatcgctctcaaagagtacggggaa
gaatggtttcaggtcatcgataatggctgtggtatttcacctgctaatttcaaggtcgtg
gcgcttaaacaccatacgtcgaagcttgcggattttccagaccttgaatctctgactacg
tttggatttagaggggaggcattgagttcgctttgcgctttggggaatctgactattgaa
acgagaacgaaaaatgaacccgttgcaatgcatttaacttttgatcattctggtctgttg
atagctgagaagaaaactgcacggcaaattggtacaactgtcactgtcaagaagttgttt
tcgaatctaccagtgcgaagcaaggaatttcatcgcaacatacgcaaggagtatggcaaa
cttatttccttgttgaatgcatatgcacttacggcaaaaggagtcaggttagtctgcagc
aacacaagcagaaagaatttaaaatctgtggttattaaaacgcagggaagtggttccctc
aaagatagcatcatacaagtttttggcatgaacatgtttaactgcttagagcccgtgtct
atatgtatatcagacgactgcaaaattgaagggtttctatctaagtctggacagggtagt
ggccgcagtatgggagacagacaatacttttttgtaaatggtagaccagtggatatgcct
aaagtgagcaagcttgtgaatgaaatatataaaggtgcaaactctaagcagtatcctgta
gccgtaatgaattttatcattccaactagagcatgtgatgtcaatgtgactcctgataaa
agaaaagtatttttttctgatgaaagcatgattttgcaatctttgagggagggtttgcag
cagatatattcctcaagtaatgccagttatattgttaatggagttgacgacactaacgaa
gcaggttcctttgagttttgctcttcacctgaaaaatctaatatcctttcagagcagtca
cctccagctggagtcaatttgaaagtttccatgagggaacattctccagaagataaaacc
tcctttagaactgtcaatatcaacgctcaaagtttgcagttattagaagggtcagtatct
agtgatcttgagaacataccgactttaggagtacaagggacaaacatggtcgatggtgtt
tttgaggctaatgcagggcaattgacaagtcatatggatgatacagctaaaaaggattta
tcaggaggattaacccttagacatcatgaggattcattgaaggacttcaccttacaagta
cgcagaatgaataagattgatggttttatggagtctaacgatgggggtttgacaactcat
atgaacagtatagctagcaagaactcttcatccccttcaacttcaattgggaaaggaaat
tctgtaagtagagattgtagtagtcattcaggctacgttcaatcatcactgaacaaattt
gtaactgtaaataagaggaagcatgaaagcattagtaccgtgttatctgaagtgcctgtc
ttaagaaatcaaagtcttcattaccaatcgaagaacagcaatttgaatctgcctgctttg
ggcttaagagatcaagttgatgattcctccaagttgaatgagaacgagcctagaaagttt
ctcagagcgcatagcatcttggatgaaactgaaaatcctagttctcctagtggcaacact
agtggtggaaaacctggagaggaatctgagaatcatgaaaaagcagtgccttctgctgga
acagaactcattgatttattccacaaaaatcccgaggatgtacctgaaaaagcatctaca
gttccaacatcggagtctctatcctctgctttaattgtagatgctcccgtacctccatct
gataaaaagatatgttctaccttggagtttagatttgaggacttattgacaaagaggcgg
cagaggatgtcaagagtactgtacaccggttacagattccttggcatgaagaaaacaagg
tgttatactgctgcgacacttgagctttctcaaccacagaatgtggagcaaaaagtacaa
gctttagatgctgctaccagagagttggagaaacttttcaaaaaagaagactttagccga
atgaaggtggtcgggcaatttaatcttggattcatcattgggaagttagatgaagattta
tttattgtggatcagcatgctgctgatgagaaatacaattttgagcatctggctcaatca
accatctttaaccagcagcctttgcttcggcctctgagattggagctatctcctgaagaa
gaagtagttgcttcaatgcatatggacataatcaggaaaaatgggtttattttggaagag
gatccacatgctccaccagggcaccattttaatctcagagctgttcccttcagtaaaaac
attacttttggagttgaagatgtcaaagatttgatctctactctttctgatagtcaaggg
gaatgttcgataatcggtagttataaaatggacacatctgattctgtttgccctactaga
gttcgtgcaatgttggcatcacgtgcttgcagatcgtctgtcatggtaggagatccactt
ggacgaaatgaaatgcagaagatagtagagcatttggcagacttgaagtctccgtggaat
tgcccacatggacggccaacaatgcgacatttggtagacctgacaaccctaagcaaagaa
ccggatgaagacacaagctgttga
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