Gossypium raimondii: 105764803
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Entry
105764803 CDS
T04129
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gra
Gossypium raimondii
Pathway
gra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105764803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105764803
03036 Chromosome and associated proteins [BR:
gra03036
]
105764803
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105764803
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105764803
PBAF complex
105764803
GBAF(ncBAF) complex
105764803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
105764803
NCBI-ProteinID:
XP_012439015
UniProt:
A0A0D2U6P4
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All DBs
Position
12:complement(49876274..49879416)
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AA seq
566 aa
AA seq
DB search
MENKPRHDPNPDSNRPEEPELDLYTIPSYSSWFAWNDIHETERQALKEFFEGSSISRTPK
IYKEYRDFIINKYREDPSRRLTFTEIRKSLIGDVTLLHKVFRFLETWGLINFLAPPPPHE
GSENDDRVRVENGAPNGVRVVATPNSLRPLSAPVVKGKNSGGGVEESGVKLPPLASYSDV
FGDLKRLHCGSCGDNCHSGYHEYKKDTFIVCDKCFKNGNYGEDKSMDDFELKDCREKSAA
NGTVWTEAETLLLLDSVLKHGDDWDLVAQNVQTKSKLDCITKLIELPFGESLIDSAKGRG
NSSGTSMSMNGIKPVVVPSSEDQENIINEDQGYDGANENEKNGDSENQEPPLKKKRTAST
SDADSSLMKQVARISTMVGPQITAAAAEAAVAMLSDEMSCPREIFYGDHIDLTNGSLSPS
IYQQERAHNTEESEIKERSNPSDSLAESQETHPKKSDIPLPLRIRAAVATGLGAAAAHAK
LLAVQEEKEIEHLVATIIEAQLKKLNSKIKHCEDAELLMEKEYAAIEGLKEYILGERINI
LRTTYNTGTSKLLEHSSVQSQTSNLG
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaagcctcgacatgacccgaacccggattcaaatcgacccgaagaaccagag
ctcgacctctacaccataccgagctactccagttggtttgcttggaacgatattcacgaa
acagagaggcaagcattgaaagaattcttcgaaggcagctcaatctcaagaacccctaaa
atctacaaggagtacagggatttcatcatcaacaaatacagggaagacccttctcgccgc
ctcactttcaccgaaatccgcaaatccctcatcggagacgtcactttactccacaaggtc
ttccgcttcttggaaacctggggtttgatcaacttcctcgccccgcctccaccccacgaa
ggttccgagaacgatgatagggtccgggtcgaaaacggggccccgaatggagtccgggtc
gtcgctactcctaattcgttgcggccgctttcggcgccggtcgttaagggtaagaacagt
ggtggtggggttgaagagagtggagtcaagttgcctcccctggcttcatattctgatgtt
tttggtgatttgaagagactacattgtggtagttgtggagataattgtcattctgggtac
catgaatataaaaaggatactttcatagtttgcgataaatgcttcaaaaatggaaattat
ggcgaggacaagtctatggatgatttcgagttgaaagattgccgtgagaagagtgctgcc
aatggtactgtgtggaccgaagcagaaactcttcttcttttggattctgttctgaaacat
ggagatgactgggatcttgttgctcaaaatgttcaaaccaagtctaaacttgattgtatt
acaaagctcattgagctgccttttggggagtctttgatagattctgccaagggaaggggc
aattccagcggtacaagtatgagcatgaatggcataaaaccagttgttgttccttcatct
gaggatcaagagaatattataaacgaggatcaaggttatgatggtgcaaatgagaacgaa
aagaatggggattctgagaatcaagagcctcctttgaagaaaaaacgcactgcttccact
tcagatgctgatagttctctcatgaagcaggttgctcgcatctctaccatggttgggcct
caaatcactgctgctgcagctgaagctgcagttgcgatgctttctgatgaaatgtcttgt
ccgagggaaattttttatggtgatcatattgatttaactaatgggtcgctatctccttca
atttatcagcaagaaagagctcataatacagaagagtcagagataaaggagaggtctaat
ccatcagactctcttgcagaatctcaagagacacatccgaagaagagtgacataccttta
ccattgcgaattagagcggcagttgcaacaggtcttggagcagcagctgctcatgccaaa
ttattagctgtgcaggaagagaaggagattgaacatttagttgcaaccataatcgaagca
caattaaagaaattgaactccaaaatcaagcattgtgaagatgcggagcttctaatggag
aaggaatatgctgcaatcgagggacttaaggagtatatccttggagagcggattaatatc
ttacgaacaacgtataacactggtacatccaaattgttagagcacagttctgtacaatca
caaaccagcaacttaggttaa
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