Gossypium raimondii: 105764943
Help
Entry
105764943 CDS
T04129
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E
KO
K07466
replication factor A1
Organism
gra
Gossypium raimondii
Pathway
gra03030
DNA replication
gra03420
Nucleotide excision repair
gra03430
Mismatch repair
gra03440
Homologous recombination
gra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105764943
03420 Nucleotide excision repair
105764943
03430 Mismatch repair
105764943
03440 Homologous recombination
105764943
03460 Fanconi anemia pathway
105764943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gra03000
]
105764943
03032 DNA replication proteins [BR:
gra03032
]
105764943
03400 DNA repair and recombination proteins [BR:
gra03400
]
105764943
Transcription factors [BR:
gra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
105764943
DNA replication proteins [BR:
gra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
105764943
DNA repair and recombination proteins [BR:
gra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
105764943
MMR (mismatch excision repair)
105764943
DSBR (double strand breaks repair)
HR (homologous recombination)
105764943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
RADX
zf-CCHC_3
zf-CCHC_2
DUF223
zf-CCHC_4
DUF936
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
105764943
NCBI-ProteinID:
XP_012439219
UniProt:
A0A0D2T4W1
LinkDB
All DBs
Position
12:51299417..51303193
Genome browser
AA seq
856 aa
AA seq
DB search
MEVNLTGGAVARIINREVSTERDLKPLLQVIELKEVQTTSKNPQQQQQEPKKSERYRLLL
SDGSLTQQGMLATSKNELVKSSKLQIGSVIQLTQYICNVIQDRMIVIIIELDVIVEKCDI
IGKPVAAPRSSRLTQAPTDQPGTVMAQSNSLGGSSVGGSMADRLNSAGTTLQQPRMNQWH
GNSRSNESDQINYPAANAPPSYPKADPSAGFPGSSPLDRPYGVQSTGFNNPRPATSRPLS
TSNYQSVPTYQQPSPMYTNRGPVAKNEAPPRIIPISALNPYQGRWTIKARVTAKGELRRY
NNARGEGKVFSFDLLDSDGGEIRVTCFNAVVDQFYNQIETGKIYLISRGSLKPAQKAFNH
LNNEHEILLDSTSTIQPCYEDDNRIPRQQFHFRTISDIECMENNSIVDIIGVVSFISPAA
SIMRKNGVETQKRTLHLKDMSGRSVELTLWGSLCNAEGQKLQSLCDSGEFPVLAVKAGRV
NDFNGKAVGSISSTQLFIDPDFPEAHSLKNWFVTDGRNTPTVSISRETSSVSRTDNRKTL
SQVKDEKLGTSEKPDWITVAARIAYIKLDNFCYTACPIMNGDRQCNKKVTNNGDGKWWCD
KCDRSVDECDYRYIIQLQIQDHTGIIWVTAFQESGQDIMGVPAKDLYYLRYENQDDEKFM
EITRRVMFNKYIFKLKVKEETFSDEQRVKSTVVKVEKVNFSSEARYLLDLIAKIKANDSG
LFAPKAEFTTPNTGLDYTGVGIDGRRDLAPPTASREYGLPVNQGGQYGNHYGGSGVRESA
SNMDIFCNSCGVTGHSSTNCPTIMNGPVQAIGRGYSDRVFTGASVGGVSGECFKCHQTGH
WARDCPNSGRLPPLKH
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaaatctgacgggaggggcagtggctcgtattataaacagagaggtgtcgacg
gagagggatttgaaacctttgcttcaagtcatagagttgaaagaggttcaaacgacgtct
aagaatccgcagcagcagcagcaagaaccgaaaaagagcgagaggtataggctattgcta
tcggatgggtcgttgacgcagcaaggaatgctcgctaccagtaagaatgaacttgtgaaa
tcctcgaagctgcaaattggctccgttattcaattgactcagtacatttgcaacgtaatc
caagatcgcatgattgttattatcattgagttggatgtgatagttgaaaaatgtgatatt
attgggaagcctgtagcagcaccaagatcttctaggctaacacaagcccctactgatcaa
cctgggacggtgatggcacagagcaattcattagggggaagctcagttggtggcagcatg
gctgataggttgaactcagctgggaccactctgcaacagcctagaatgaatcaatggcat
ggtaattctcgttcaaatgaatctgatcagataaactatcctgctgcaaatgcaccaccc
tcttatcccaaagcggatccttctgccggttttcctggatcatcacccctagatagacca
tatggtgttcagagtacgggtttcaataatccgaggccagcaacttcacgtcctctaagc
acctctaactaccaatccgtacctacatatcaacagccatccccaatgtacactaaccgg
gggcctgttgccaagaatgaggcaccacccaggataatcccaatttctgctctgaatcca
tatcagggccgctggacaataaaagccagagtaacagcaaagggagaacttaggcgctac
aacaatgcacgcggtgaaggaaaagttttctcttttgacctccttgattctgatggtgga
gaaatacgggtgacctgctttaatgctgtggttgaccaattctataaccagattgaaact
ggtaagatatatttgatttctaggggaagtctaaaacccgctcagaaggcatttaatcac
cttaataatgagcatgaaatacttcttgatagcacatcaacaatacagccatgttatgag
gatgacaacagaattccacgacagcaatttcatttccgtaccataagtgatattgaatgt
atggagaacaatagtattgtggatataattggtgtagtatcatttatcagccctgctgct
tcaataatgagaaaaaatggtgttgaaactcagaagagaacccttcatttgaaggacatg
tctggccgaagcgttgagttaactttatggggatctttatgcaatgctgaaggacaaaag
ctccaatctttgtgtgattctggggagtttccagttctagctgtgaaagctggtagggtg
aatgattttaatgggaaggcagtgggctctatctcttcaacccagttatttatagatcct
gattttcctgaggctcatagtttaaagaattggtttgtcactgatgggaggaacactcct
actgtctctatctccagggaaacgtcaagtgtgagtagaacagataatagaaaaacttta
tcacaagtcaaagatgagaagctcggaacttctgagaaaccagattggattacagtggca
gcaaggattgcatacatcaagttggacaatttctgctatacagcttgtcccatcatgaat
ggggatcgtcaatgcaacaaaaaggttacaaataatggagatgggaagtggtggtgtgat
aaatgtgataggtcagtagatgaatgtgactacaggtatataattcagttgcagatacag
gatcatacaggcataatatgggtgactgcttttcaggaatctggtcaggatatcatgggg
gtgcctgcaaaagatttgtactatctgaggtatgaaaaccaagatgatgaaaaatttatg
gaaatcactcgtcgagttatgtttaataaatacatattcaagttaaaggtaaaggaggaa
acttttagtgatgaacagcgtgtgaaatcaacagtggtgaaagtagaaaaagtaaatttt
tcgtcggaagcgaggtaccttttggatttgattgctaagattaaagcaaatgattcaggt
ctttttgcaccaaaggcagagtttaccactcccaatactggactggattacaccggagtt
gggattgatggaaggagggatcttgcaccaccaactgctagtagagaatatggattacca
gtaaaccaagggggtcaatatggaaaccattatggtggttctggggttagagaatctgct
tcgaacatggatatattctgtaatagttgtggggttacaggtcatagctctacaaattgt
cctaccatcatgaatggtccagtacaggccattggtaggggctattctgatagagtattt
actggggcaagtgttggtggtgtctcaggtgagtgctttaaatgtcatcaaactggacat
tgggccagagactgcccaaactctggacgtttacctccattgaagcactga
DBGET
integrated database retrieval system
