Gossypium raimondii: 105765528
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Entry
105765528 CDS
T04129
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105765528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105765528
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105765528
U7-dependent histone pre-mRNA processing factors
105765528
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
105765528
NCBI-ProteinID:
XP_012440145
UniProt:
A0A0D2UAV8
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Position
12:complement(56027440..56033411)
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AA seq
742 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDPSLLQPLSRVASTVDAVLL
SHSDTLHLGALPYAMKQFGLSAPFYSTEPVHRLGLLTMYDHYLSRKQVSDFDLFSLDDID
AAFQSIARLTYSQNYHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNRRKE
KHLNGTVLESFVRPAVLITDAYNALNNQPPKPQRERDRDFVEIISKTLEGGGNVLLPVDT
AGRVLELLLVLEENWSLKSLNFPIYFVTYVSASTIDYVKSFLEWMSDAIAKSFETSRDNA
FLLKNIKLLTSKSELDSVPDGPKVILASMASLEAGFSHDIFVEWAADVKNLVLFTERGQF
GTLARMLQADPPPKAVKVTMSRRVPLTGEELIAYEEEQNRLKKEEALKASLIKEEESKAS
LATDVNSSDPMVIDTHNKHPSLDGLGQHGSRFRDVLIDGFVPPSSSVAPMFPFYDNTSDW
DDFGEVINPDDYVIKDEDMDQGATRTGGDMDGKLDEGSASLILDTTPSKVISNELTVQVK
SSLVYMDYEGRSDGRSVKSILAHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIE
ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENDMLSLLPISTPAPP
HKSVVVGDLKMADFKQFLASKGVKVEFAAGALRCGEYVTLRKVGVASQKGGGSGTQQIII
EGPLCEDYYKIREYLYSQFYLL
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggttcaggtaaccccactctgtggagtatacaacgagaaccctctctct
tacttagtctcaatcgacggcttcaacttcttaatcgactgtggatggaatgacctcttt
gacccctcccttcttcaacccctctccagggttgcttcgacggtagacgcggtgttgctg
tcgcattcggacacgctccacctcggtgctcttccgtacgctatgaaacaatttggactc
tcggctcccttttattccactgaaccggttcatcgattaggccttctcactatgtacgat
cattatctctctcgtaagcaagtatcagacttcgatttgttctccctggatgacattgat
gctgctttccagagtatagctcggctaacctactcgcagaattatcatttatctggaaaa
ggtgagggtattgtaattgctcctcatgttgctggccatctcttgggtggtactgtttgg
aagataacaaaggacggagaagatgtcatatatgctgtcgactttaaccgacgcaaagag
aagcatttgaatggaactgttctagaatcttttgttcggcctgctgttcttataactgat
gcctacaatgctttgaacaatcaacctcctaagccgcaaagggagagggacagagatttt
gttgaaatcatctcgaagactctagaaggtggtggaaatgtgttgctacctgtcgatacc
gctggtcgtgtcttggaacttctcttggttttagaagagaactggtcattgaagtctttg
aacttccccatctactttgtgacatatgtttcagcaagcacaattgattatgtcaagagt
tttcttgagtggatgagtgatgctatagctaaatcctttgaaacttcacgtgataatgct
tttcttctgaagaatatcaaacttttaacaagcaagagtgaacttgatagcgtgcctgat
ggtcccaaggttatactagcatccatggccagcttagaagcaggattttctcatgatatt
tttgttgagtgggcagcagatgtcaagaatcttgttctatttactgaaaggggccagttt
ggcacgttagctcgtatgctccaggcagatccacctccaaaagctgttaaagtcacgatg
tctaggagggttcctttgactggggaggagttgattgcttatgaagaagaacagaaccgg
ttgaaaaaagaagaagctttaaaagctagtcttatcaaagaggaagaatctaaagcttct
cttgcaaccgatgtcaattctagtgatccaatggttattgacactcataataagcatccc
tcactggatgggttaggtcaacatgggagcagattccgtgatgttctgattgatggattt
gtgcccccatcctctagtgttgccccaatgtttcccttctatgacaatacttctgattgg
gatgactttggtgaggtcataaatcctgatgattatgtaataaaggatgaagatatggac
caaggagctacgcgtactggtggggatatggatggaaaacttgatgaaggctctgctagt
ttgatacttgacacaacaccttcaaaagtcatatctaacgagttgactgtgcaagtaaag
tcttcacttgtttacatggattatgaggggcgttctgatggtcgttctgtcaaatcaatc
cttgcccacgtggctccattaaagcttgtcttggtgcatggatcagcagaggcaacagag
catttgaagcaacattgcttgaaacatgtttgtcctcatgtttatgctccccaaattgaa
gaaacaattgatgtcacatctgatttatgtgcttataaggtacaattatctgagaagttg
atgagcaatgtcctctttaaaaagttaggagactacgaaatagcttgggtggatgctgaa
gtagggaagacagaaaacgacatgctctcattactacccatctcgacaccagctcccccg
cataaatctgtggttgtaggtgatctgaaaatggcagatttcaagcagtttcttgccagt
aaaggtgtcaaggtagaatttgctgcaggggcgttgcgatgcggtgaatacgtgacatta
cgcaaagttggggttgcaagccaaaagggtggtggttctggtacacagcaaatcataatc
gaaggtcccttgtgcgaagattactacaagatacgggaatatctatattcccagttttat
ttactttag
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