Gossypium raimondii: 105765931
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Entry
105765931 CDS
T04129
Name
(RefSeq) LOW QUALITY PROTEIN: pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gra
Gossypium raimondii
Pathway
gra00040
Pentose and glucuronate interconversions
gra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
105765931
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
105765931
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
105765931
NCBI-ProteinID:
XP_012440668
UniProt:
A0A0D2QSJ2
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Position
5:35729737..35731349
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AA seq
434 aa
AA seq
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MGISSYSFFLFLFVVIIPTLEAHIAEYDEYWTARELEAIENLDKAYHSNPEEVVRHYNDH
FSRTMLEFYITKRVLAESKKGPCEVTNHVDSCWRCDPDWEKNRKKLADCAPGFARGTTGG
KDGEFYVVTDPIDNAADPKPGTLRHAVTQTGPLWITFKGSMTIKLQQELIVTSDKTIDAR
GANVEICNGAGITIQFAKNIIIHGLQIHHIIPAKGGKIKDGENHHGLRGDSDGDGVSIFG
ATNVWLDHLALHHCADGLIDVVQGSTAVTVSNCHFTDHNDVMLFGASDSYSADKKMQVTV
ALNHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGGTSNPTIISXGNRYSAPGFGAKE
VTCRGLLKPGQWKNWNWVSQGDHFENGAFFTPSGSPSASKQFGADKMMPFKPGQMVPELT
KYAGPLSCTIGRSC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttctagttatagtttctttctgtttttatttgttgtcataatcccaacccta
gaagctcatatcgctgagtatgacgagtactggacggcacgagaattggaagccattgag
aacctggacaaggcctatcactccaacccggaggaggtggtccgccattacaatgaccac
ttctctagaaccatgctcgagttttatatcaccaaaagggtgttggcagaatcgaaaaag
ggtccctgtgaggttaccaaccacgttgacagttgctggagatgtgatcctgactgggaa
aagaacaggaagaagttggccgactgtgcccctggatttgctcgaggtactaccggtgga
aaggatggtgagttttacgtggtcactgaccctattgataatgctgctgaccccaagcct
ggaactctgcgtcatgctgtcacccaaactggaccactttggatcactttcaaagggtcc
atgaccatcaagctgcaacaggagctcattgttacaagtgataagaccattgatgcgagg
ggagccaatgtggaaatttgtaatggtgctggtatcactatccaatttgcaaagaatatc
attatccatggccttcaaatccatcacattattcccgccaagggtggcaagattaaggat
ggtgaaaaccaccatgggttacggggtgacagcgacggagatggggtgtctattttcgga
gcaaccaacgtttggcttgaccatcttgcccttcaccattgcgccgatggccttatcgat
gtcgttcaaggatcaactgccgttaccgtttctaactgccacttcactgaccacaacgat
gtgatgttgtttggagcaagcgactcttacagtgccgacaagaagatgcaggtcactgtt
gctttgaaccacttcggtaaaggattggtagagaggatgcctaggtgccgatttggtttt
attcatgtcgtcaacaatgactacaatcactggttcctgtatgccattggcggcaccagc
aaccctacaattatcagcncaggaaataggtattcagcgccaggctttggggctaaagag
gtgacctgtaggggcctcttaaagccgggacagtggaagaattggaattgggtatcacaa
ggtgaccacttcgagaacggtgccttttttacaccatccggtagtccaagtgccagcaag
caatttggtgccgacaaaatgatgcctttcaaacccggtcaaatggtccccgaactcaca
aagtatgctggaccattaagctgcacaatcggccgtagttgctaa
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