Gossypium raimondii: 105766561
Help
Entry
105766561 CDS
T04129
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105766561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105766561
Enzymes [BR:
gra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105766561
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105766561
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105766561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
105766561
NCBI-ProteinID:
XP_012441508
UniProt:
A0A0D2SFJ2
LinkDB
All DBs
Position
4:25866051..25871957
Genome browser
AA seq
602 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPESAPLDGHFLRYKWCRIQSDK
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEEIFGRYNSSGSGVINASLTGSASSTSLTNGSTPLYPAAVTQRSGGETWFEVGRSKT
YTPTADDIGHVLKFECVIVDAETKQPVGHPNTILTSRVIPAPSPSPRRLIPVSGADMLGN
LQSDGRVSSSGSFTVLSYNILSDSYASSELYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYSGNIHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEVAVQTTQKKAALNRLVKDNVALIVVLEAKFSNQGADNLGKRQLLCVA
NTHVNVPQELKDVKIWQVHTLLKGLEKIAASADIPMLVCGDFNSIPGSAPHSLLAMGKVD
PMHADLLVDPLAILRPHSKLTHQLPLVSAYSSFLRGVGLGLEQQRRRMDPTTNEPLFTNC
TRDFIGTLDYILYTADSLTVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCVPRP
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctacgtgtgcacctcccttctgatataccaattgttggctgcgagctc
acgccttacgtgctcttacgccgacctgacaagaccgttacaaccgatgatgtgcctgag
tcggcccctcttgatggccacttcttgaggtataagtggtgtcgcatacaaagtgataaa
aaagttgctgtgtgtagtgtacatccctctgagcaagccacactgcagtgccttggttgt
gttaaggctaaaatacctgttgctaaaagttatcattgctctccaaagtgcttctcagat
gcgtggcagcatcaccgtgttctgcatgaccgtgctgcaagtgctgtaaatgaaaatgga
aatgaggaggaagagatatttggtcgttacaattcctcaggttctggagttataaatgct
agcttaacaggttcggcatcaagcactagcttgacaaatggttcaacacctctgtatcct
gctgcagtcacacagaggagtggtggtgaaacctggtttgaagttggacgctctaaaaca
tatacaccaacagctgatgatattggccatgttctcaagtttgagtgtgttattgtagat
gctgagacgaaacaacctgttggacatcccaatactattttgacatctcgtgttattccg
gcaccttcccctagtcctaggcgcttgatccctgtaagcggagctgatatgttgggaaat
ctacagtcagatggtcgtgtttcatcctctggaagttttactgtcctctcttacaacatc
ttgtctgactcgtatgcaagcagtgagttatacagttattgcccttcatgggctctttct
tggccatatcgcaggcagaatttgttgcgggaaattgttggttatcgtgcagacattgtt
tgtcttcaggaggtgcaaaatgaccattttgaggaattttttgcccctgagctggacaaa
catggatatcaagctttatacaagagaaagacgaatgaggtttacagtggaaatatccat
acaattgatggttgtgccacatttttccgtagagatagattttcccatgtcaaaaaatat
gaggttgaatttaataaggctgctcagtcgttgactgaggttgccgttcaaactacccag
aagaaagctgctttaaatcgtttggttaaggataatgttgcactaattgtggttttggaa
gcaaagttcagtaatcagggagctgacaatcttgggaagcggcagcttctttgtgtggca
aacacacatgtaaatgttccacaagagctaaaggatgtcaaaatctggcaggtgcatacg
ctcttaaagggattggagaaaatagctgcaagtgcagacattccaatgttggtgtgtggg
gattttaattctattcctgggagtgcaccccattcacttcttgctatgggaaaggtagat
ccaatgcatgcagatttattggtagatcctcttgccattttgcgacctcacagcaagttg
actcatcagttaccactggttagtgcttactcatcttttttaagaggtgttggtctgggt
ctggagcaacagaggagaagaatggaccccacaaccaatgaacctttattcacaaattgc
acgagagattttattggcactctagactacatactttacacggcggattcgttgacagtt
gagtcattattggaactcttggatgaggatagcttgagaaaagatacagcacttccttct
ccagagtggtcctctgatcatatagctctgttagctgaatttcggtgtgtgcctaggcct
agacgctga
DBGET
integrated database retrieval system
