Gossypium raimondii: 105766574
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Entry
105766574 CDS
T04129
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105766574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105766574
03012 Translation factors [BR:
gra03012
]
105766574
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105766574
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105766574
Translation factors [BR:
gra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105766574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
ATPase
SRP_TPR_like
AAA_19
Rad17
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
105766574
NCBI-ProteinID:
XP_012441525
UniProt:
A0A0D2TZ41
LinkDB
All DBs
Position
4:25422045..25430497
Genome browser
AA seq
1035 aa
AA seq
DB search
MSLRLFSINNKLTSVLFNRPFPAPTLIFPFSLLQISSFAMSYRPNYQGGRRGGGPNSGRG
GGRRGGGGGGGRGGRGGEQRWWDPVWRAERLRQKAAEMEVLDEAEWWYKMNQMKKGQEQE
MIIKRNFSRSDQQVLSDMAYELGLYFHAYNKGKALVVSKVPLPNYRADLDEHHGSTQKQI
QMSTETERRVGNLLDVSRDTKSGDDSGVASSRGATKPLPDVKRIDSVSTIETDSSKEKFS
AELKKKQENLNASNSVKAMLSFREKLPAFKGKAEFLKAVAQNQVLVVSGETGCGKTTQLP
QFILEEEISSLRGANCNIICTQPRRISAISVAARISSERGENVGETVGYQIRLESKRSAQ
TRLLFCTTGVLLRQLVQDPYLNGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL
MSATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDVLQKTRYNIKSEFDNYQGNSRRRR
KELDFKKDNLTALFEDVDIDSEYKNYSASTRHSLEAWSGSQIDLGLVEATIEHICRHEAD
GAILVFLTGWDDISKVLDKIKVNSFLGDLSKFLVLPLHGSMPTINQREIFDRPPPNKRKI
VLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ
PGVCYRLYPKLIHDAMLEYQLPEILRTPLQELCLHIKSLQLGSVGSFLAKALQPPDPLSV
ENAIELLKTIGALGDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIAAALAH
RDPFVLPINRKEEADAAKRSFAGVSCSDHIALVKAFEGYKDAKRNGRERAFCWENFLSPV
TLQMMEDMRNQFIDLLSDIGFVDKSPGASAYNQYSHDLEMVCAVLCAGLYPNVVQCKKRG
KRTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFVRDSTNISDYALLLFG
GNLIPSKTGEGIEMLGGYLHFSASKSVLDLIRKLRGELDKLLNRKVEEPGFDISVEGKGV
VSAVVELLHSQNVRY
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgcgcttgtttagcattaataataagctcacttcggttcttttcaatcgcccc
ttccccgcccctacgctgatctttcctttttctctactccagatttcatctttcgctatg
tcttatcgccctaactaccaaggtggccgtcgaggcgggggtcccaactccggccgcgga
ggtggacgccgaggaggcggcggcggcggaggacgcggaggacgaggcggtgaacagcgc
tggtgggacccggtttggcgcgctgagcgcctccgtcaaaaggccgctgagatggaagtt
ctggatgaggctgagtggtggtataagatgaatcaaatgaaaaaaggacaggagcaagag
atgatcattaaacgaaatttcagccgttccgaccagcaagttctctctgatatggcttac
gaattaggtctttactttcatgcgtataataaagggaaggctcttgtggttagtaaagtt
ccattgccaaattatcgtgcagatcttgatgaacatcatggatcaacacagaaacagatt
caaatgtctacagaaactgagaggcgagtgggaaatctcttggatgtctcaagggacaca
aagtcgggtgatgattcaggagtggcatctagtaggggagccacaaaaccattgcctgat
gtaaaaagaattgattcagtttctacaattgaaacagattcttccaaggaaaaattcagt
gctgaactcaagaaaaagcaggaaaacttgaacgcaagtaacagtgtgaaggcgatgctg
tctttcagagaaaaactaccagcattcaaagggaaagctgagtttctgaaagctgttgct
caaaatcaggttctagtggtttcaggagaaacaggttgtggtaaaacaacacagcttcct
caatttattttagaagaggagatatcatctctgaggggtgctaattgtaacataatatgt
actcagccacgtcgcatatctgcgatatctgttgcagccagaatatcctcagaaagggga
gagaatgttggtgaaactgttggttatcagattcgcctagagtcaaagcgatctgctcag
acacggctgttgttttgcacaactggagtgttactcagacagttggttcaggacccatat
ttaaatggtgtgagtcatttgctagtggatgaaattcatgaaagaggcatgaatgaggac
ttcctgttaataattttacgtgaccttcttcctcggcgtccagacttgcgtcttattttg
atgagtgcaaccatcaatgctgatttgttctctaaatattttggaaatgctccaactatt
cacataccggggttgacctttccagtggctgagttatttctcgaggatgtgctgcagaaa
actcgttataatatcaaatcagaatttgacaattatcaaggcaattcacgaaggaggagg
aaagagcttgatttcaagaaagataatttaactgcactatttgaggatgttgacattgat
tctgaatataagaattacagtgcatctacaagacattcacttgaagcatggtcaggttca
cagattgatttgggtctggtggaggccacaattgagcatatttgccgccatgaagctgat
ggagctattcttgtattcctcacaggctgggatgacatttctaaggtccttgacaagatt
aaagtgaacagctttcttggggatcttagcaagtttctggttcttcccttacatggttct
atgcctaccattaatcaacgagaaatatttgaccgtcctccacctaacaagcgaaaaatt
gttttggcgacaaatattgctgaaagtagcatcaccatagatgatgttgtgtatgttata
gactgtggaaaggcaaaggaaacaagttatgatgctcttaacaagctggcatgtctttta
ccttcatggatttcaaaggcttcagcacatcagagacgaggccgtgctggtcgtgtgcaa
cctggagtttgctataggctgtacccaaaattgatccatgatgcaatgcttgagtatcaa
ttacctgaaattctccgaacaccattgcaagagctatgtctacatatcaaaagcttgcag
cttggatctgtgggatcatttttggcaaaggcacttcagcctccagatcctctttctgtt
gaaaatgcaattgagcttcttaaaacaattggagctttgggtgatgcagaggagcttact
cctcttggtcgtcatctttgcactctacctttggacccaaatataggaaagatgcttcta
atgggggctatttttcaatgcctgaatcctgctttgacaattgcagctgctcttgctcat
cgtgatccatttgtccttccaataaataggaaagaggaagctgatgcagcaaaaagatcc
tttgctggtgtttcttgcagtgaccatatagcacttgttaaagcttttgaaggatataaa
gatgcaaagcgtaatggaagagagagagcattttgttgggaaaattttctatccccagtg
accttgcagatgatggaggatatgagaaatcagtttatagatctgttatcagacataggc
tttgtagacaaatcaccgggtgctagcgcttacaaccaatacagccatgatttggagatg
gtatgtgcagtcctttgtgctgggctttacccaaatgttgtgcaatgcaaaaaaagagga
aaacgtacagcattctacactaaagaagtcggaaaagttgacattcatcctgcatctgtt
aacgcgggggttcatctctttccattgccttatatggtttacagtgaaaaggtcaaaaca
accagcatttttgtccgagactcaacaaatatttctgattacgctttacttctgtttggt
ggtaatcttattcctagcaaaacgggagagggtattgagatgcttggggggtaccttcat
ttttctgcgtcgaagagtgtactggacttgatacggaaactgcgtggggaacttgacaag
cttttgaacagaaaggttgaagaacctggatttgatatatctgttgaaggaaagggagta
gtgtctgctgtggttgagttattgcacagccaaaatgtacggtactga
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integrated database retrieval system
