Gossypium raimondii: 105767845
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Entry
105767845 CDS
T04129
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105767845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105767845
Spliceosome [BR:
gra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105767845
Complex C
U5 SnRNP specific factors
105767845
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
105767845
NCBI-ProteinID:
XP_012442872
UniProt:
A0A0D2TIS8
LinkDB
All DBs
Position
5:9686796..9697844
Genome browser
AA seq
2354 aa
AA seq
DB search
MWNNNNNNAQIAPPGTGGSTIPPPPAAQPSYTVLAPHMTPQEAEAKLEEKARKWMQLNSK
RYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLL
ENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKR
MRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYAWFYDHKPLVKTKLINGPS
YRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYR
DMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTED
PDLPAFYYDPLIHPITATNKERREKKVYDDEDEDDFVLPEGVEPLLSDTQLYTDTTAAGI
SLLFAPRPFNMRSGRVRRAEDIPLVSDWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHR
PPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNF
NLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTF
SHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLR
GIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIK
QNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIR
RGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKF
SPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIK
RHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKP
ADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLD
HNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIA
GPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNN
ENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDN
PNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFE
NRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKI
GLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEE
DQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINT
LFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGV
EGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPT
INRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQEL
DALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYW
IDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPG
SKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVD
DTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKT
AEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEK
FGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIV
TEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQ
QRQQIAEIEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISAT
NLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKE
IRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWLHTQPNELPQLSPQDVTSHARILE
NNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRINKDTGSNPHGYLPTHYEKVQM
LLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYNEDHRPTHFLEFSNLE
EGETAEGDREDTFT
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaataataacaacgctcagatagcgccgccgggaaccgggggatccacc
atcccaccgcctccagctgcccagccttcgtacacggttctagctccgcatatgactccg
caggaagcagaggcgaagctggaggagaaggctcggaaatggatgcaacttaactctaaa
cggtatggggataagaggaaatttggttttgtcgagacgcagaaggaggatatgcctcct
gagcacgtcaggaagattatcagagaccatggggacatgtcttcaaaaaaatatcgccat
gataaacgtgtgtatcttggagcccttaaattcattcctcatgcagtttacaagctcctt
gagaatatgccaatgccttgggaacaggttcgagatgtgaaggttttgtaccatattaca
ggagcaatcacgtttgtgaatgaaataccatgggttgttgaaccaatctatttagcacag
tggggttcaatgtggatcatgatgcgaagggagaaaagagatcgtcgtcatttcaagaga
atgcggtttccaccatttgatgatgaggagcctccattagactatgctgataatctgtta
gatgttgatcctctagagccgattcagttagagctggatgaagaagaagattctgctgta
tacgcttggttttatgaccataagcctcttgtaaaaacaaagcttatcaatggcccgagt
tacaggaaatggcatctttctcttccaattatggccactttgcaccggcttgctggacaa
cttctttctgatttgattgaccgtaattatttctacttgtttgacatggagtcattcttc
acagctaaagcattaaacatgtgcatacctggtggtcctaagtttgaaccattataccgt
gatatggagaaaggggatgaggactggaatgaatttaatgacataaacaaactcattatc
cggtcacctcttaggacagagtatcgaattgctttccctcatctttataacaataggccc
aggaaagtaaagctttgtgtgtatcatactcccatggtcatgtacattaaaacagaagac
cctgatttaccggcattctattatgatcctttgatacaccctataactgccacaaacaag
gagcgacgagaaaagaaagtttatgatgacgaggacgaagatgattttgtcttgcctgaa
ggggtggaacctttgctgagtgacacacagctttacaccgatactactgctgctgggatt
tctcttttatttgctccacgcccttttaatatgagatctggtcgggtgcgacgtgctgaa
gatataccacttgtgtcagactggtacaaggagcactgtcctccatcttatcctgttaaa
gtgcgagtaagctatcagaaactgttgaaatgctttgtgctgaatgagctgcatcacaga
ccaccaaaggctcagaagaagaagcacttgtttcggtctctccaggctaccaagttcttt
caaacgacagagcttgattgggttgaagcaggtctacaagtttgcaagcaagggtacaac
atgctgaaccttttgatacataggaaaaatttgaactaccttcacctggattacaacttc
aacttgaaacctgtgaagactctcaccacaaaagagcgcaagaagtcacgatttggcaat
gcttttcatctttgtcgggagattctgcgtttaacaaagcttgtggttgatgccaatgtt
cagtttcgacttggaaatgttgatgccttccaattggcagatggtctgcagtatactttt
tcccatgttggtcagttgactgggatgtaccgttacaagtaccggctcatgagacagatt
aggatgtgcaaagacttgaaacacttaatttattatcgcttcaacactgggccagtgggg
aaaggacctggatgtggattttgggcaccaatgtggagggtatggctctttttccttcgt
ggcattgtgcctcttctagaaaggtggttaggaaatctgcttgcacgtcaatttgaaggt
cgacattcgaagggagtggctaagactgttaccaagcaacgtgttgagagccacttcgat
ctggaacttcgagctgctgtcatgcatgatgttcttgatgccatgccagagggaattaaa
caaaataaagctagaacaatattgcagcatctcagcgaggcatggcgctgttggaaggca
aacattccgtggaaggttccgggtttgccagttcccattgagaatatgatcctcagatat
gtcaagtctaaagctgactggtggacaaatgttgcgcattacaatcgtgagcgtatcaga
agaggtgcaactgttgataaaaccgtttgtaggaaaaacttaggcagattgacacgcctc
tggctaaaagctgagcaggaacgacagcacaattatttgaaagatgggccatatgtcact
ccagaagaagccgttgccatttataccacaactgtgcattggttggaatcaagaaaattt
tctcccattccatttccccctttgtcttacaagcatgatacaaagctactcatccttgca
ctggaaaggttgaaggaatcttacagtgtagctgtgaggttaaaccaactccaaagagaa
gaactggggttaattgaacaggcttatgataatcctcatgaggccttatcaaggatcaag
cggcatctccttacccaacgtgccttcaaagaagttggaatagagttcatggatttgtac
agctatttgattccagtgtatgaaattgagccccttgagaagattactgacgcttacctt
gaccaatacctatggtatgagggagacaagcgccacctatttcctaattggattaagcct
gcagattctgagccacccccgcttttggtttacaaatggtgtcaaggtataaacaatttg
caaggaatatgggacacaagtgaggggcagtgtgtggtgatgcttcagacaaaatttgag
aagttctttgagaaaattgatttgactatgttaaacaggcttctgcgtttggttcttgat
cacaacattgcagattatgtaactgcaaagaacaatgtggtgttgtcttacaaagatatg
agtcacacgaattcatatggtcttatacgtggtcttcagtttgcttcttttgttgtccag
tattatggacttgttctggatctcttgcttcttggattgactcgtgctagtgagattgct
ggtccaccccagatgccaaatgaattcatcacatactgggacacaaaagttgaaaccagg
catccaattcgtctgtactctaggtatattgatagggtgcacatattattcagattcaca
catgaagaggcacgagacctaatccagcgttatcttactgagcatcctgatccaaacaat
gaaaacatggttggatataacaacaagaaatgctggccaagagatgcaagaatgaggctt
atgaaacatgatgttaatcttgggagaagtgtcttctgggacatgaagaatcgtctacct
agaagcatcacaacgttggaatgggaaaacagctttgtttctgtctatagcaaggataat
cccaacctgctttttagcatgtgtggttttgaagttcgaatacttcctaaaataagaatg
acccaagaagcatttagcaatacaagagatggggtttggaatttgcagaatgaacaaaca
aaagagcgaactgcagttgctttcttacgggttgatgatgagcacatgaaggtctttgag
aatcgtgtcaggcagattctcatgtcttctgggtcaacaacatttacaaagatagtcaat
aaatggaatactgctttaataggtcttatgacttacttccgtgaagcaactgtacataca
caagagcttctagatctgcttgttaaatgtgaaaataaaattcaaacacgtatcaagatt
ggattgaattcaaaaatgcctagtcggttccctcctgtcattttttacactcctaaagaa
attggaggacttggcatgttatcaatgggacacatattgattccgcagagtgaccttcga
tacagtcaacagactgatgttggtgtgactcactttaggagtggaatgagccatgaagag
gaccagctgatccctaatctttaccggtacatacagccatgggagagcgagttcatagac
tcacagcgtgtttgggccgagtatgctctgaagaggcaggaagctcaagcacaaaatagg
cgcctaactcttgaggatttggaagattcatgggataggggaataccacgtataaatact
ttgtttcagaaggataggcacacattagcatatgacaaaggatggcgagtacgcaccgac
ttcaagcagtaccaggtgctgaagcagaatccattctggtggacccaccaaaggcatgat
ggcaaattgtggaacttgaacaactatcgaactgatgtcatccaagctctgggaggtgtt
gagggaattctagagcataccttgtttaaaggaacatacttccctacttgggagggtctt
ttttgggaaaaggcttctggattcgaggagtcaatgaagtataagaagcttactaatgct
cagagatctggtcttaaccagattcctaaccgtagatttactctctggtggtcacctaca
atcaatcgggctaatgtttacgtgggttttcaagtgcaactagatctcactggaatattc
atgcatgggaagatcccaaccttgaaaatatctttgattcagatcttccgtgcccatttg
tggcaaaaaattcatgagagtgtagttatggatctttgccaagtgctagatcaggaattg
gatgctttggaaattgaaactgttcagaaggagacaattcatccaaggaagagttataag
atgaacagctcttgcgcagatattcttctctttgcagctcatagatggcctatgtcgaag
cctagtcttgtggctgagtccaaggacatgtttgatcaaaaagcaagcaataaatattgg
atagatgtacaacttcggtggggagattatgattcgcatgatattgagcgttacactcga
gccaaatttatggattatacaacagacaacatgtctatttatccatctcctactggggtg
atgattggacttgatctggcttacaacttgcattctgcgttcggtaactggttccctgga
tcaaagccactgcttgctcaggcaatgaataagatcatgaagtcaaatccagctttatat
gtcctaagggagcggataagaaaaggtttgcagttgtattcttctgagcctactgagcca
tatctttcatcccaaaattatggggagatcttcagcaaccagattatctggtttgttgac
gacaccaatgtttatcgtgtgacaatccataagacatttgaagggaatctcacaacaaag
cccattaatggtgccatcttcatatttaatcccaggactggacagttgttcctaaaggtc
attcacacaagcgtgtgggcaggtcaaaagcgtcttggtcagcttgctaagtggaaaact
gctgaagaagttgctgctcttgtgcggtctctgcctgttgaagaacaaccaaagcagatc
attgttactcggaagggaatgcttgatcctttggaggttcacttactggatttccctaac
atagttatcaagggaagtgagctgcaactaccattccaagcttgcttgaaaatagaaaaa
tttggtgatctgattcttaaggctacagaaccacaaatggttttgtttaacatctatgat
gactggttgaagagtatctcatcatacactgcattctcccgacttattctgatccttcgt
gcacttcatgtgaacaatgagaaggctaagatgttactgaaacctgacaagacaattgtt
actgagccacatcatatctggccttctctaactgatgatcagtggatgaaggttgaagtt
gctttaagagatctcatactctctgactatgccaaaaagaacaatgtgaacacatcagcc
ctaacacagtccgagattcgtgacattattcttggagctgagattactccaccctctcaa
cagaggcaacaaatagcagagattgagaaacaggctaaggaagcaagtcagctgacagct
gtgacaactaggactacaaatgtgcatggtgatgagctcattgtcacgaccacaagtcct
tacgagcaagcagcatttgggtccaagactgactggcgtgttagagcaatatcagctact
aatctttatctccgtgtcaatcatatatatgtgaactcagaagacataaaggaaacgggg
tacacttacatcatgccaaagaacattttaaagaagttcatctgcatagcagatttgcgg
actcaaattgctgggtacttgtatggaataagccctcctgataatcctcaggttaaggaa
attcgctgtattgcaatgccaccacagtggggtactcatcagcaagttcatcttccatca
gctcttcctgaacatgatttcttgaatgatctggagcctttgggatggttgcacacacaa
ccaaatgagcttccccaattatcaccacaggatgtcacatcccatgctcggattttggag
aacaacaaacagtgggatggagagaagtgcattatcttgacttgcagtttcactcctggt
tcttgctcattaacagcgtacaagcttacaccaagtggatatgagtggggacggataaac
aaagatacaggaagcaatcctcatggctaccttccaactcattacgagaaggtgcagatg
ctcttaagtgataggttccttgggttttatatgattcctgacaatggtccatggaattac
aatttcatgggagtgaagcatacagttagcatgaaatatggggtgaagctagggacacct
agagaatactacaacgaggaccacaggccgactcatttccttgagttcagcaacttggag
gaaggtgagactgcagaaggagatcgggaggatacattcacctaa
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