Gossypium raimondii: 105768558
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Entry
105768558 CDS
T04129
Name
(RefSeq) pre-mRNA-processing factor 39-2 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105768558
Spliceosome [BR:
gra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
105768558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
Motif
Other DBs
NCBI-GeneID:
105768558
NCBI-ProteinID:
XP_012443981
UniProt:
A0A0D2TQZ1
LinkDB
All DBs
Position
5:12199028..12206502
Genome browser
AA seq
1143 aa
AA seq
DB search
MEVHISGTETETEWHPKKGNYLEGFDEQKLKEIIAEGELDFDGWTKLISEVENFFHDEIE
NICLVYDSFLSEFPLCYGYWRRYADHMMRLCTTDKAVDVFERAVQSATYSIDVWVDYCGF
SVSVFEDDNDIRRLFKRAMSYVGKDYLCHTLWDKYVEFEFSREQWSSLANVYIQTLRFPS
KKLHHYYESFQKLVATWKEEMQCPNHMDLLSDPRVENEVSSCHTDAEISCIIKELLDAST
GMDGTEALAKYLSIGKQFYREASELDEKIHHFEAGIRRRYFHVKELDISQLDNWHEYLNF
VEMHGDFDWAVKLYERCLIPCANYPEFWMRYVDFMESKGGREIANFALARAAEVFLKRMP
VIHLFTARFKEKIRDVSGAHIALLHYEKESDLSFVETVSIKANMEKRLGNFVAASNTYKE
AMEIAAVKQKFDILPILYINFSRLQYMITSNSDAARDILIDGIKCLPHCKLLLEELIKFG
MMHGGPRDIHVLDAIINDVVSLRPSQGMDAKEAEEISSLYLQFVDLCGTIDDIRKAWNRH
IKCFPESARGSTYKFSVINGIKSLPLKITACRRQGSPDPLPSHPSGDRSLDIPVQSPSRD
NILKPLENDDAQPNHAALDCVPDTISPFLEDHEIPLYQATVNKLQSGEVDESLQGGRQHS
SEEVSNKLQSGEDINTTTNMSSHNLIQDEMRNGVEALETSEENSKENKFRQELEHKPEHD
VNELPLERLSLGQLDRESLDSISFANQEGETFVETSLPNESMVEKEPPQETSKLNGIMPE
VAQSNDGYNLESSPRSAQASDSAGIQTEMSSPSSLASQQNIKKTEPLVRRTPPDDVGSWH
QRSNADRVHRENKFGHRRHSHKRQHQRQQMSPKRQHSRSETGTQVPMSQGYPSQSMYLQS
PQVQQGGQSQSQYSTSAAHPNLAAVHNWSMQDVHQQNFAPSQTPPAPVPGYPQTQISQNP
MQSNEQLGQMQTNQAYNHMWQYYYYQQQQQQFLLQQQQQPLPQQQLVQQQYQQHPQLLQV
QQQYLQQQQLPYQQPQLLQQQQFIQQQQYLQQQQQLQPQGSYQQQFPPPNPHPYRQQQQE
QEKRQQEGQITASQVQTQSELSKEESMMEPRRQTTLQVQDPLPCRNDASETVLSTISPNS
QQG
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacacatttcaggaacagaaacagaaacagagtggcatcctaagaaaggaaat
tatttagaaggttttgatgagcagaaactcaaagaaattattgctgaaggtgaattagat
tttgatgggtggactaagcttatatcggaggtcgagaatttctttcatgatgaaatagag
aatatatgtttagtctatgactccttcttgtccgagtttcctttgtgctatggttactgg
aggaggtatgctgatcacatgatgcgcttatgcaccactgacaaagctgttgatgtcttt
gaacgagctgtgcaatcggcaacatactctattgatgtttgggttgactattgcggcttt
tctgtttcagtttttgaagatgataatgatattcgacggctatttaaaagagccatgtcc
tatgttggaaaggattacttatgtcataccttgtgggataagtatgttgagtttgagttt
tctcgggagcaatggagttccttagctaatgtttatatccaaaccctaagatttccatcc
aaaaagctacatcattattatgaaagtttccagaagttggttgccacttggaaagaggag
atgcaatgtccgaatcatatggatttactgtcagatcccagagtagaaaacgaagtctct
tcatgtcatactgatgcagaaatttcttgtatcatcaaagagttgctggatgcttctact
ggcatggatggaactgaagcactggcaaaatacttgtccattgggaagcaattttaccgg
gaggcttctgagttggatgaaaaaatacatcactttgaggctggcattcgaaggcgttat
tttcatgtgaaggaacttgacatcagtcaattggataactggcatgaatatttaaacttc
gtagagatgcatggtgactttgattgggctgttaaactttatgagagatgcctaattcca
tgtgctaattatcctgagttttggatgcgttatgtggatttcatggaaagtaagggtgga
agagagatagcaaactttgcacttgccagagcagcagaagtttttctaaagagaatgcca
gtgatacaccttttcactgctaggtttaaggagaaaataagggatgtttcaggtgcacac
atagcacttcttcattatgagaaagaatcagatcttagttttgttgaaactgtttcaata
aaagctaacatggaaaagcgtttgggtaactttgtagcagcttctaatacatacaaagaa
gcaatggaaattgctgctgtgaagcaaaagtttgacattcttcccatattgtatattaat
ttttcacggcttcaatacatgattaccagtaacagtgatgctgccagagacatcttaata
gatggtatcaaatgtctgcctcattgcaaattgcttttggaggaactgataaaatttgga
atgatgcatggagggcctagggacatacatgttttagatgctataataaacgatgtggta
tctctacggccatctcaaggtatggatgcaaaagaagcagaggagatatcaagcttatat
ttacagtttgttgatctttgtggaaccatagatgatataagaaaagcatggaatcgccac
ataaaatgttttcctgagtctgcaagggggagcacatataagttttctgttatcaatggt
ataaaatctttacccttgaagataactgcttgtagaagacaagggagtcctgatcctttg
ccttcacatccatctggggatagaagcttagacatcccagtgcagtcaccatcacgagac
aatatattgaaacctttggaaaatgatgatgcccagcctaaccatgctgctttggactgt
gtaccagacacgatatcaccatttctggaagatcatgaaattcccctttaccaggctaca
gtcaacaagcttcaatcaggagaagttgatgaaagtttgcagggggggaggcagcacagc
tctgaggaggtttcaaacaagcttcaatcaggagaggatataaacactactaccaatatg
tcatctcataatttaatacaggatgaaatgagaaatggagttgaagcattagaaacttca
gaagaaaattctaaggaaaataaattcaggcaagagcttgaacataagcctgaacatgat
gtaaatgaacttccattggagagactttcattgggtcaactagatcgtgagtctttggat
tcaatcagttttgcaaatcaggagggtgaaacttttgtagaaaccagcttaccaaatgaa
agcatggtggaaaaagaacctcctcaggaaaccagcaagctcaatggaattatgccggag
gttgctcaaagtaatgatggatataacctggaatctagtccaaggagtgctcaagcatct
gattctgctggaattcaaactgaaatgagcagtccttcctctctggcaagtcagcagaac
atcaagaaaacagagccacttgtgcggaggactcctccagatgatgttggaagttggcat
caaaggagtaatgctgatagagttcaccgagaaaataaatttggccatcgaaggcactct
cataaaagacagcatcaaaggcaacaaatgtctccaaaaaggcagcattcgcgaagtgaa
actggcacacaagtgcctatgagtcaaggttaccccagtcagtccatgtatttgcagagc
ccacaagttcaacaaggtggccaatcacagagtcaatactccacatctgctgctcatcct
aatttagctgctgttcataactggtctatgcaggatgtgcaccaacagaattttgcccct
tctcagactccacctgctcctgtacctggttatcctcaaacgcagatctctcaaaatccc
atgcaaagcaatgagcagcttgggcaaatgcagactaatcaagcatataatcacatgtgg
caatattattactaccaacagcaacagcagcagtttcttttgcagcagcagcaacagcct
ctgcctcagcagcagcttgtacagcaacagtatcagcaacacccacagctgctacaagtg
caacagcaatatcttcaacagcaacaattaccctatcagcagccacagctgctgcagcaa
caacaatttattcaacagcaacagtatctgcagcagcagcaacaactacaaccgcaaggc
tcatatcagcagcagtttccaccaccaaatccccatccttaccggcagcagcagcaagaa
caagaaaaaagacagcaagaaggacagattacagcatctcaggttcagacacagagtgaa
ttgagcaaagaggaatccatgatggaaccaaggcgacagacaacattgcaggtccaagat
ccattgccttgcaggaatgatgcatctgaaactgtattatctacaatatctcccaattcc
cagcagggataa
DBGET
integrated database retrieval system
