Gossypium raimondii: 105768756
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Entry
105768756 CDS
T04129
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
gra
Gossypium raimondii
Pathway
gra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105768756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105768756
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
105768756
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_16
TPR_14
TPR_CcmH_CycH
TPR_8
TPR_19
TPR_12
TPR_9
TPR_6
CFAP70_mid_TPR
TPR_7
CFAP70_TPR_C
DUF6584
BTAD
Motif
Other DBs
NCBI-GeneID:
105768756
NCBI-ProteinID:
XP_012444366
UniProt:
A0A0D2TM89
LinkDB
All DBs
Position
5:14382661..14391431
Genome browser
AA seq
1176 aa
AA seq
DB search
METTGELEGEERRRLEELLESNPDDSSLHFQLGVCLWETQTEKEKAAEHWVISVKQNPKN
AAAFTYLGHYYATVSVDIPRAIKCYQRALSLNPDDSDSGEALCDLLDSQGKETLEVAICK
DASHNSPRAFWAFRRLGFLQVHQKKWSEAVQSLQQAIRGYPTSPDLWEALGLAYHRLGMF
TAAIKSYSRAIELEDTRVFALIECGNIFLMLGSFRKGIEQFQQALKISLQNMSALYGLAS
GLLGMAKECRNSGAFRWAASLLEDARKVAEASIKSAGNSSCTWKLHGDILLTYAQVFPWT
EESQGLEYNAETFKNSVYSWKNTCGLAAISARNSYQRALHLAPWQANIYIDIAISSNLIS
SFNQDNTLDKCTWKLPEKLTLGALALEGENSEFWVALSCLSECNALKQHSLIRGLQLDVS
LAYAWAYLGKLYREENEKKLARQAFDCARGIDPSLALPWAGMSADAHTGDSTPDDAFESC
LRAVEIFPLAEFQIGLAKLALLSGNLSSSQVFGAIQQAVQRAPHYHESHNLYGLVHEARM
QFQAAIASYRLARYAINISLGTVLKSHLKDISTNLARSLSKAGNAIGAVQECEDLKKEGM
LDAEGLQIYAFSLWQLGENDLALSVTRALAASVSTMDRISAAVSVSFICRLLYYISGPDL
AIGSILKIPKELFHSSKISFIVSAINALDQNNRLESIISSSRYFLASQEEITGMHYLIAL
SKLIKHGTKHHLGFQNGVNHLRKALHMYPNSILIRNLLGYILLCSEVWGNSHVSSRCSIV
DDSDSKNKEGLKSAWEISSAGAVACHAIGNSEPRFSFPTCSCQCTSSGAMQELQKCLRRE
PWNHNARYLLILNLLQKAREERFPVNICIVLERLISVALSNEFYSGKEAICQYQKFQIYL
CASEILLQRGNIMGCIDQAKNASVLSLPDSFQFFGHLLLCRAYAAEGNLKFSKEEYERCL
ELKTDFLVGWLCLKLMESQYEEQPASNIFELAFKEGSEGRNNSWNMWMAVYSLGMGLICL
WNQDFLSAEEFLEQPCSLTSAESCIFLCHGVTSMEIARRYHDSQFLSSAIRSLSKAHITS
SVPIPIVSALLAQAEGSIGSRKKWERNLRLEWFSWPPEMRPAELFFQMHLLARQIASESD
SSSRVEGCQSPLQWVLRAIHTNPSDLRYWKVLPKLL
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacgggtgagctggagggagaagaaagaaggcgactggaggagttgctcgaa
agcaatcccgatgactcttcccttcattttcaacttggagtatgcttgtgggagactcag
acggagaaagagaaagcggcggagcattgggtgatttccgttaaacaaaaccctaagaac
gcagctgcctttacctacttgggccattactacgccaccgtttcggtcgatatccccaga
gccatcaagtgttaccagcgagctttatcccttaatcccgatgattccgattctggggaa
gctttgtgtgatttgttggatagtcaaggcaaggagaccttggaggttgcaatttgcaaa
gatgcttctcacaactctcccagggctttctgggctttccgccgattgggttttctccag
gtgcatcaaaagaaatggtctgaagctgtacaaagtcttcaacaagctattcggggctat
ccgacttctcctgatttgtgggaagctcttggtcttgcctaccaccggcttggcatgttt
actgctgctattaagtcctattcacgtgcaattgaattggaagatacaagagtctttgcg
ctaattgaatgtggaaacatctttttgatgcttggttcctttagaaagggaattgaacaa
tttcagcaagcactaaagatctcgctacaaaacatgtctgcactctatggacttgcgtct
ggactgctaggtatggcaaaagaatgtagaaattcaggagcgttcagatgggcagcttca
ttattagaggatgcacgtaaagttgcagaagctagcatcaaatcagctggaaattcatca
tgtacatggaagttgcatggtgatattctgcttacatatgcacaagtttttccatggaca
gaggagagccagggtttagaatacaatgcagaaactttcaagaactccgtatattcatgg
aagaatacctgtggtttggctgctatatctgccagaaactcttatcaacgagctttgcac
ttagctccatggcaggctaatatctacattgacattgcaattagttctaatcttatctct
tctttcaatcaggataacacacttgataagtgtacttggaagttacccgagaagttgaca
ctgggggctttagcactagagggtgagaactctgagttctgggtggctttgagctgtttg
tctgagtgtaatgcacttaagcagcactcgttaatcaggggactgcagttggatgtgtct
ttagcctatgcttgggcatatcttggaaagctttatagagaagagaatgagaagaaattg
gctaggcaagcatttgactgtgctagaggtatagatccatcgctggcattaccatgggct
gggatgtcagctgatgctcatactggggattcaacaccagatgatgcttttgagagctgc
ctacgtgctgtggagatatttccgcttgcagagttccaaattggacttgctaagcttgct
ttactttctgggaacctttcttcttcgcaggtatttggagctatccagcaggctgtgcaa
cgggcaccgcactaccacgaatcccataatttatatgggctagttcacgaggcacgtatg
cagtttcaagctgccattgcttcttacaggctagctcgctatgccatcaacatttcttta
ggcactgtcctcaaatctcacttgaaagacatatcaacaaatttggctagatcacttagt
aaggcagggaatgccattggtgctgtgcaagaatgtgaagacttgaagaaagaaggtatg
cttgatgctgaaggtttgcaaatatatgctttctccttatggcaattgggtgagaatgat
ttagccctctctgtgactagggccctggctgccagcgtttctaccatggataggatatct
gcagctgtgtctgttagtttcatttgtagattgctgtactacatttctggaccggattta
gcaattggtagcattctgaaaataccgaaggaattatttcatagttcaaaaataagcttt
attgtgtctgccattaacgctctggatcagaataataggctagaatcgattatttcaagc
agtcgatactttcttgcatcacaggaggagatcactgggatgcattatctaatagcactt
agcaaactgattaaacatgggacaaagcaccaccttgggtttcagaatggagtcaaccat
cttagaaaagctcttcacatgtaccctaacagtattttaataaggaacctacttggttat
attttgctatgcagtgaagtatggggaaatagtcatgtgtcaagtagatgttccatcgtt
gacgattctgactctaagaacaaagagggcttaaaatcggcctgggagatttccagtgct
ggggcagttgcttgccatgcgatcggcaatagtgaaccgagattctctttcccaacatgt
agctgtcaatgcacgagttctggagctatgcaagaattgcagaagtgcttacggcgagag
ccatggaaccataatgcccgatacttgcttatccttaatcttttacagaaagcacgtgaa
gagagatttcctgtaaacatctgtattgttcttgagcgtctcataagtgtggctctttct
aatgagttctattctggaaaagaagccatttgtcaatatcagaagtttcagatttattta
tgtgcttctgaaattcttttgcaaagggggaatataatgggctgtattgaccaagccaaa
aatgcttcagtactttctcttccggatagcttccagttttttggacacttactattatgt
cgtgcctacgctgcagaaggaaatttaaaattttctaaagaagagtatgagaggtgcttg
gagcttaagacagattttctagttggttggctatgcctaaaactaatggaatctcaatat
gaagagcaacctgcttcaaatatttttgagttagccttcaaggaaggctcagaagggagg
aataattcatggaatatgtggatggctgtatatagtttagggatgggcctgatatgttta
tggaatcaggactttctttcagcagaggaatttctggaacaaccttgttcgttaaccagt
gctgagagctgcattttcctttgtcatggtgtcacttctatggagattgcaaggaggtat
catgattcgcaatttttatccagtgccataaggagtctcagcaaagctcatataacttct
tcggtcccaattcccattgtctcagcattgttagcccaagcagaaggaagcattggttct
aggaaaaagtgggagagaaatcttcgccttgaatggttttcttggccaccagaaatgaga
ccagcagagctgttttttcaaatgcatttgcttgcaagacagattgcatccgagtctgac
agttcatccagggtggagggctgccaaagtcccctgcaatgggttcttcgagccattcac
acaaacccttctgacttgagatattggaaagttctgccaaagcttttgtaa
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