Gossypium raimondii: 105769039
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Entry
105769039 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105769039
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105769039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105769039
03041 Spliceosome [BR:
gra03041
]
105769039
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105769039
Spliceosome [BR:
gra03041
]
Complex B
Other components
Prp19-related factors
105769039
Complex C
105769039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
105769039
NCBI-ProteinID:
XP_012444870
UniProt:
A0A0D2TRG7
LinkDB
All DBs
Position
5:complement(13432747..13437415)
Genome browser
AA seq
913 aa
AA seq
DB search
MSLPKELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSDAPFKKRFIIYERALKALPGSY
KLWHAYLRERLEIVRNLPVTHPQYETLNNTFERALVTMHKMPRIWIMYLSTLTEQKLITK
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSNLWQEAAERLASVLNDGQFYSIKGKTKHRLWLELCDLLTTHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
ALKMENMDLSDEEEEEEDEDEEDIRLDIALCKSKSKFEKKIFKGFWLHDDKDVDLRLARL
EHLMNRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGKP
HTLWVAFAKLYETYKDLANARVIFDKAVQVNYKTVDHLASIWAEWAEMELRHKNFKGALE
LMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGTLESTRAVYERIL
DLRIATPQIIINYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKS
KLERARELFEHAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLDM
YEIYIARAAEIFGVPKTREIYEQAIQSGLPDKDVKTMCLKYAELEKSLGEIDRARAIYVF
ASQFADPRSDADFWDKWREFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQ
NIDEAKDKMKQAGISEDEMAALERQLLPAADNAIAKDNSRKVGFVSAGVESQADGGLKTT
ANLEDIDLPDESDSDEEKVEIAQKDVPSAVFGGIRKREDGDDIQDGDDALAAKEKGGKSL
LGALERIKRQKQA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgccaaaggaactatacccatctcaagatgaccttctttacgaagaagaactg
ttaagaaacccctttagtttgaaactctggtggaggtatttaatagctagatcagatgcc
cctttcaagaaaagatttataatctacgagcgagccttgaaagctttgcctggtagttac
aagctttggcatgcttatttacgtgaacgtctcgagattgttcgcaatttacctgttact
caccctcaatatgaaacccttaacaatacttttgagagggcgcttgttacaatgcacaag
atgcctaggatttggataatgtacttgtcgacgttaactgaacagaaattgattactaag
acacgtaggacgttcgatagagcactttgtgcgttgcctgtgactcaacatgataggatt
tgggaaccttatttggtttttgtgagtcaaaggggtatccccattgagacatcacttagg
gtttataggagatatttgaagtatgatcctagtcatattgaggatttcattgagtttttg
gtgaattcaaatctgtggcaagaagcagcagagaggttagcgtctgttttgaatgacggt
cagttttattcgataaagggtaaaactaagcatcggttgtggttagagttgtgtgatttg
ctcacaacacatgcgacagaggtttcagggcttaatgtggatgcgataatcagaggtgga
attagaaaatttacggatgaagttgggagactttggacttcacttgctgattattatatc
agaagaaatctgttcgagaaggcgagggatatttttgaggagggaatgacaactgtggtt
actgtgagggatttcagtgtcatatttgacgcttattcacaatttgaagagagtatggtt
gcccttaaaatggagaacatggatttgagtgatgaggaagaagaagaggaagacgaagac
gaagaagacatccgtttggacattgctctgtgcaaatcaaaatccaagtttgagaagaag
atatttaaggggttttggttgcatgatgataaggatgttgatttgaggttggctcggtta
gagcatttaatgaatagaaggccggaattggctaacagtgtccttttacggcagaatcca
cataatgtggagcaatggcaccgtagggtcaagttatttgagggaaatcccaccaagcaa
atattgacatacacagaggcagttaggacgattgacccaatgaaagctgttggaaagccc
catactctatgggtggcttttgcaaagctgtatgaaacttataaagatctggcgaatgct
cgtgtcatttttgataaagctgtccaagtaaattacaagactgttgatcacctggcaagt
atatgggctgagtgggcagagatggagctgaggcacaagaatttcaaaggtgcattggag
ctaatgagacgtgctacagctgagccttctgttgaagtcaaacgaagagtggctgctgat
gggaatgaacctgttcagatgaagctacataaatccttgaggctctggacattctatgtg
gacttggaagagagtctgggtacactggagtcaactcgagcggtctatgagagaatactt
gatttaagaattgctacaccacaaattataataaactatgcatttttattagaggagaac
aaatattttgaagatgctttcaaagtgtacgaaagaggggtcaagatattcaagtatcca
catgtgaaggatatatgggtcacttatctgtcgaagtttgtaaagagatatgggaaatca
aaactggaacgagcaagggagctgtttgagcatgctgttgaaacggcacctgctgatgca
gtaaaacccctgtatcttcaatatgcaaagctggaggaggattatgggctagcaaaacga
gctatgaaggtctacgatcaagcgactaaagctgttccaaatcatgagaagcttgacatg
tatgagatttacattgcccgtgcagctgagatctttggtgttccaaaaacaagagaaatt
tatgagcaggcaatacagtctggccttccagataaagatgtgaagacaatgtgtttgaaa
tatgcagagttagaaaagagcttaggagaaattgatcgtgctcgagcaatatatgtattt
gcatctcagtttgctgatccacgctctgatgcagatttttgggataaatggagggagttt
gaggtgcaacatggtaatgaagataccttcagagaaatgttgcgtattaaacggagtgtc
tctgcaagttatagccagacacacttcattctccctgagtatctgatgcagaaggatcag
aacatcgatgaagctaaggacaaaatgaaacaggctggtatctctgaggatgaaatggct
gctcttgaaaggcagttactacctgcggctgataatgctattgccaaagacaactctagg
aaagtagggtttgtgagtgctggagttgagtcacaagccgatggtgggttgaaaacaaca
gcaaatcttgaagacattgatttgccagatgaaagtgattcggatgaagaaaaagttgaa
attgcacaaaaggatgtcccgtctgctgtgtttggaggtattcggaagagggaagatggc
gatgacattcaggatggagatgatgccttggctgccaaagaaaaaggcggtaagagccta
ctgggtgcacttgagcgaattaaaaggcagaaacaagcttag
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