Gossypium raimondii: 105769261
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Entry
105769261 CDS
T04129
Name
(RefSeq) uncharacterized protein LOC105769261 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
gra
Gossypium raimondii
Pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105769261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gra03041
]
105769261
Spliceosome [BR:
gra03041
]
Complex C
Other components
Step II factors
105769261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
105769261
NCBI-ProteinID:
XP_012445226
LinkDB
All DBs
Position
5:243441..248861
Genome browser
AA seq
581 aa
AA seq
DB search
MYQAFKKPSMDSLQIYADNSDEEDLSHQPSTLSADSSPPRLIPSKSAAPKVDDTMLALTA
AEARQAQSRPIDPTQHVVAFNPTYDQLWAPTYGPAHPYAKDGIAQGMRNHKLGFVEDASI
DSFVFDEQYNTFHKYGYAADPSGSNYIGDLDALQKNDAISVYNIPQHEQKKRKIEREKDE
DEVDPTEIDNPATDVWLMKNKRSPWAGKKEGVQTELTEEQKKYAEEYAKKKEEKGHKGEK
GEHVVDKTTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFF
PKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIK
YWDTETGQVISTFSTGKVPYVVKLNPDEDKQNILLAGMSDKKIVQWDINTGQITQEYDQH
LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA
AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW
KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaggctttcaagaagccatccatggatagtctccaaatatatgcagataatagt
gatgaggaagacctaagtcaccagccatctactctgtctgcagactcttcacctccacgg
ctcatcccctccaaatctgcagcaccaaaggttgatgacacaatgcttgccctaactgca
gcagaagcacgccaagcccaatcaaggcccattgatccaacccagcatgttgttgccttc
aatccaacctatgaccaactctgggctccaacctatggcccagctcatccatatgcaaag
gatggcattgcccagggcatgcgcaaccacaagctgggatttgttgaggatgcctccatc
gactcttttgtttttgatgagcaatacaacaccttccacaaatatggttatgcggccgac
ccttcaggaagcaactatattggtgatttggatgctttacagaagaatgatgccatttca
gtctataacatcccacaacatgagcaaaagaagcgaaaaattgagagggagaaggatgag
gatgaggttgatccaacggagatcgataatccagctactgatgtttggttgatgaagaat
aaaaggagtccttgggcaggtaaaaaagagggggtgcaaacagagttgacagaggagcaa
aagaagtatgcagaggagtatgcaaagaagaaagaagagaaaggccataaaggtgagaaa
ggcgagcacgtggtggataagactacctttcatggcaaagaggagagagactaccaagga
aggtcttggattgcacctcctaaggatgcaaaagcaacgaatgatcattgttatatacca
aagagattagtacacacttggagtgggcacacaaaaggtgtttcagctattcggttcttc
cccaaatatgggcacttaattctctctgcagggatggatactaaagtgaagatatgggat
gtgtttaattcaggaaagtgtatgaggacatacatgggccattctaaggcagtaagagat
atttcattttgtaacgatggcactaaatttttgactgctggatatgacaagaacatcaag
tactgggatactgaaaccgggcaggttatttctactttctcaactgggaaggttccgtat
gtagttaagcttaaccctgatgaagataagcagaatattcttttagcgggtatgagtgat
aagaagattgttcagtgggatattaataccggacaaattacacaagagtatgatcagcat
ttgggggcagtgaataccattacatttgtggataacaaccggagattcgttacatcaagt
gatgacaaatcacttcgagtgtgggaattcggaattcctgttgttatcaagtatataagt
gagcctcacatgcattctatgccatctatttcgcttcaccccaacacaaattggcttgca
gctcaaagtttggataaccaaattcttatttacagtaccagagaaagatttcagcttaat
aagaaaaaaaggtttgctgggcacattgtggccggctatgcttgccaagtcaacttttca
ccagatggacgctttgttatgtctggagatggagagggtaagtgctggttctgggactgg
aagagctgcaaagtttttaggactctcaagtgccacgagggagtttgcattgggtgtgag
tggcatcctttggagcaaagtaaagttgctacttgtggctgggatggcttgattaagtac
tggtga
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