KEGG   Gossypium raimondii: 105769294
Entry
105769294         CDS       T04129                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
gra  Gossypium raimondii
Pathway
gra03030  DNA replication
gra03410  Base excision repair
gra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105769294
   03410 Base excision repair
    105769294
   03420 Nucleotide excision repair
    105769294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gra03032]
    105769294
   03400 DNA repair and recombination proteins [BR:gra03400]
    105769294
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     105769294
DNA replication proteins [BR:gra03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    105769294
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      105769294
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 105769294
NCBI-ProteinID: XP_012445281
UniProt: A0A0D2TG65
LinkDB
Position
5:complement(6386243..6405828)
AA seq 2204 aa
MNGGDNRRLDRRDLWRSKKQKLIRSAEEELESKLGFDLFTEGEKRLGWLLTFASSSWEDS
DAGKVYSCVDLYFVSQDGSCFKSKFKFRPYFYAAAKNKAEMDVESYLRRRYETQIAGIEI
VEKEDLDLKNHLSGLHKRYLKISFDTVQQLMDVKRDLVHVVERNRTKFDAAEAYESILMG
NREQRPLDLLDLLVDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSTGVMLEKRTDLLQRA
EVRVCAFDIETTKLPLKFPDAEYDSIMMISYMVDGQGYLIINRECVGQDIEGLEYTPKPE
FQGFFKVTNVKNEIELLRQWFTHMQEVKPGIFVTYNGDYFDWPFIEKRAAYHGFRMSDEI
GFRCDENQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVR
FAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYKANVICPNKHQSDAEKFYKNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSGY
EQLISNLDRDLQYAIRVEGKMDLESVLNYDEVKNEIMEKLVKLRDEPIHEECPLIYHLDV
AAMYPNIILTNRLQPPSIVTDEVCTACDFNRPDKTCLRKLEWVWRGEIFMAKKSDYYHLK
KQIESELFDGTDNQLSKSFLDLPKLEQQSRLKDRLKKYCQKVYRRVLDKPVTELREAGIC
MRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKAGGNPMKIQEAQDMVVLYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCA
LPGSFPENFTFKTNDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVNPVNKIYTIHSECS
IEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAE
LFDKFLNGSTLEECYSAVAVVANRWLDLLDSQGKDIADSELLDYISESSTMSKSLADYGE
QKSCAVTTARRLADFLGDAMVKDKGLHCQYIVACEPRGTPVSERAIPVAIFETDPEIMKF
YLRKWCKTSSDVGIRSIVDWLYYKQRLSSAIQKIITIPAAMQKVTNPVPRVAHPDWLHKR
VREKEDKFRQRKLVDIFGSSVRNDTVKKANDAVLTTDVVGDLEDFQNKRGSKKGPVPIVR
SYEMNKDQGPIEAAIQGNTMQRQTDHRGSEQNLSSILQPNVQSTENIDRNVDYQGWLELK
KRKWKDNLERRKRQRLSNLRTSNHVSHNSEMLGAMENHKDASGRTGVGSYFRRHEVSLTN
SYWQIMQLVPGSQNGQFLAWVVVEGIMLKVPITVPRVFYLNSKATISENFPGRRVNKILP
HGRQSYNLFEVIIDEDQFRRESKKLAALLADPEIEGIYERKIPLEFNAILQLGCVCKVDK
TAKKRNAQDGWRLSELHMKTTTECAYLEQAIPFFYLYHSICEGRAIYAAYFSSSGTVFVV
VVNPHHESESISPFILEKYFREACLALSIEPPARNGISFKVNYVEHVKDAEKNLQRAISE
HRHEHQGPILAVIECPNTQMMKSGIQALEDFPCVSIPSNARDNDYQLLVWQQTAAKIGMQ
RCSASSQWLSERISLSRYAHVPLGNFQSDWLLYTADVFYSRALRDQQQVLWISDDGVPDL
GGIGEEDTCFADEVCQPVITYPGAYRKVSVELKIHNLAVDALLKSNQINEMEGGALLGFD
QDVHSGNEQCGFDEANASAAAFRVMKQLIQRCLADAVSSGNVFADAILQHLYRWLCSPQS
KLHDPALHRILHKVMQKVFALLLAEFRKLGATIIFADFSKVIIDTGKYDISAAKAYCHSL
LKALQSRELFEWIELEPIHFWHSLLFMDQYNHGGILAESHENSQEKSEVDIVSNWNIAQY
LPEKIQDHFVLIVSEFLHTPWKYAQEQAANRTSSLDGSLCTPSITITAAENFEAHIVQYL
KEQISSYFTEKLLGIVRDIVLHMKGLNGSGKVGQQSVHNVPHKGDAALEFIKHVCTVLAL
DHSIQHDVLVLRKNLLKYVHVKEFAPEAEFHDPCPSFILPNVICSYCNDCRDLDLCRDSA
LLVDEWCCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCCRCRQVKAAHLAEQCG
CAGSFKCKEDVSEFRRKMQIFLNIAIRKKFQLLQECTSWILQIN
NT seq 6615 nt   +upstreamnt  +downstreamnt
atgaatggcggagataaccgacggctggaccggcgagacctttggagatcgaagaagcag
aagctgatccgcagcgcagaagaggagctcgagtccaagcttggctttgatctcttcact
gaaggcgaaaaacgtctcggatggttacttactttcgcttcgtcatcttgggaggattcg
gatgcaggaaaagtatatagttgcgtcgatctttactttgtttctcaggatggttcttgt
tttaagtcgaagttcaaattccgtccttacttttacgcagctgcaaagaacaaagcagaa
atggatgtggaatcctatttgagacgacgttatgaaactcaaattgcagggattgaaatt
gtggagaaggaagatcttgatcttaaaaaccatttgtctggtctacacaaacgttattta
aaaatatcttttgatactgttcaacaattgatggatgtgaagagagatctagtgcatgtt
gttgaaagaaaccggacaaaatttgatgctgctgaagcatacgagtcgatattaatgggg
aatagagaacaaaggccactagatcttttagatcttctagttgatctccgtgaatatgat
gttccttaccatgttcgttttgccattgacaatgatgtgagatgtggccagtggtacgat
gtaagtgtttctagtactggagtcatgctagagaagagaactgatcttttgcaacgtgct
gaagtgcgtgtctgtgcatttgatattgagacgacaaagcttcctttgaaatttccagat
gccgagtatgattcaataatgatgatatcatacatggttgacggacaaggttacttgatt
attaacagagagtgtgtagggcaagacatagagggcttagagtatactcctaaaccagaa
tttcaaggatttttcaaagtcacaaatgtgaaaaatgagatagaacttctacggcagtgg
tttacccacatgcaagaggtcaagcctggtatttttgttacatacaatggtgattatttt
gactggccattcatagaaaaaagagctgcttatcatggatttagaatgagtgatgaaata
gggtttcgatgtgatgaaaatcagggggaatgtcgagccaaatttgcttgtcatttggat
tgttttgcttgggtcaaacgtgatagttatcttcctcaggggagccacggcctgaaggct
gttacgaaggcaaagctgggttatgatccactagaggtgaatccagaggatatggttcga
tttgcaaaggaaaagccccagatgatggcctcctattctgtttctgatgctgttgcaact
tattacttgtatatgacctatgttcatccctttattttctctctggcaactattattccc
atgtcacctgacgaggttttgcgcaaaggaagtgggacactttgcgaaatgcttctgatg
gttcaggcctacaaggcaaatgttatctgccctaacaaacaccaatcggatgctgagaag
ttctataagaatcaccttcttgagagtgagacctatataggtggccatgtggaatgcctt
gaaagtggtgttttcagatctgatcttccaactagctttaaacttgacccatctggctat
gagcaactgatcagtaatcttgaccgagatctacagtatgctattagagttgagggaaag
atggacttggagtcagtcttgaactacgacgaagtaaagaatgaaataatggaaaagctt
gtgaagttacgagatgaacctatccatgaagaatgccctctcatttatcatttagatgtt
gctgcaatgtacccgaatattattttgacaaacaggcttcagccaccatcaatagttaca
gatgaggtctgtactgcatgtgatttcaatcgtccggacaagacttgcctccggaaactt
gaatgggtttggcgtggggagatattcatggcaaagaaaagtgattattaccacctgaag
aagcaaatcgagtctgaactttttgatggtactgataatcagttgtcaaaatcttttctt
gacctgcctaaactggagcagcagtccaggctgaaagaccgattgaagaaatactgtcag
aaggtttacagacgggtattggacaagccagtcactgaacttcgagaagcagggatctgt
atgcgtgaaaaccctttttacgttgacacagttcgcagctttcgagatagaaggtatgaa
tacaaaggactgaataaagtttggaaagggaagctgtctgaagccaaggctggtggaaac
cctatgaagatccaagaagcacaagacatggtagtgctttatgattccttacaacttgcc
cataagtgtattctgaactcattctatggatatgtcatgcgcaaaggtgcgagatggtac
tcaatggaaatggctggtgtagttacatatactggtgctaaaatcattcagaatgctcgc
ttacttgttgaaaaaattgggaaaccacttgaattagacacagatggtatctggtgtgcg
cttcctgggtcttttccagaaaattttacttttaaaactaatgacttgaagaagaagctg
actatctcttatccatgtgttatgcttaatgttgatgtggcaagaaataatacaaatgat
cagtaccagacacttgtgaatcctgtcaataaaatatacacaattcatagtgaatgctca
attgaatttgaagtagatggcccatacaaggcaatgattatacctgcgtctaaggaagaa
ggaatattaatcaagaaaagatatgctgtttttaatgatgatggaacccttgcggaactg
aaaggttttgagataaagcgtagaggtgagctgaaactcatcaaagttttccaggcagag
ctttttgataagttccttaatggatccaccttagaggaatgctactcagctgtcgctgtt
gttgcaaaccgctggcttgatcttcttgatagtcaaggaaaggatattgcagatagtgag
ttattggattacatatcggaatctagcacaatgagcaagtctttagcagattatggtgaa
caaaagtcatgtgcagtgaccacagcaaggcgtcttgctgattttcttggtgatgctatg
gttaaagataaaggactgcactgccagtatatagtggcatgtgaaccaagaggtacacct
gttagtgaacgtgctattcctgttgcaatatttgaaactgatcctgaaataatgaagttc
tatctacgcaagtggtgcaaaacttcttcagatgttggcatacgttctattgttgattgg
ttgtattacaagcaacggcttagctcggcaattcagaaaattatcactatacctgccgca
atgcaaaaggttacaaatcctgtcccaagggtcgctcatcctgattggcttcataaaagg
gttcgtgagaaggaggataaattccgtcaaagaaagttggttgatatctttggctcatca
gttagaaatgatacagtgaaaaaggcaaatgatgctgttctcaccacagatgtggttgga
gatctagaagacttccaaaacaaaaggggttctaagaaaggacctgtaccaattgttcgt
agttatgaaatgaataaggatcaaggtccaatcgaggcagccatccaaggcaatactatg
caacgccaaactgatcatagaggaagtgagcaaaatttgtcgtcaatattgcagccaaat
gttcaatccactgaaaatattgacagaaatgttgactatcaaggatggcttgaactgaag
aagaggaaatggaaggacaatctggaaaggaggaagaggcaaaggttgagtaatctaagg
acatcaaatcacgtcagtcacaattctgaaatgctgggtgccatggaaaaccataaagat
gcctctggaagaactggtgttggttcatattttagaagacatgaagtatctctaacaaat
tcctattggcagattatgcagctagttccaggttcacagaatggtcaatttttggcttgg
gttgttgttgaaggaattatgcttaaggttcctataactgttccaagagtgttctatttg
aactctaaagcaactatatcagaaaattttcctggaagacgggtaaacaagattctgcct
catggaaggcagagctataacctatttgaggttataattgatgaagaccagtttaggagg
gagagcaagaagcttgctgctcttcttgctgatccagaaattgagggaatttatgaaaga
aagattccgctggagtttaatgctattctccagcttggttgtgtttgtaaagtagataag
acagccaagaaacgaaatgcccaggatggttggagactgagtgaactgcatatgaagact
acaactgaatgtgcttatctggagcaggcaatccctttcttttacttgtatcatagtatt
tgtgaaggccgtgccatatatgctgcttatttttcttcatcaggaacagtgtttgtggtg
gtagttaatcctcaccatgaaagtgaaagtatatctccatttatccttgagaaatatttt
cgtgaagcttgcctggcattgtctattgaaccaccagctcgtaatggtatttctttcaag
gtgaactatgttgaacatgtcaaggatgctgaaaaaaatttacaaagagctataagtgaa
cacaggcatgaacatcaaggacctattcttgctgtcattgaatgcccaaatactcaaatg
atgaagtcaggtatacaagctctagaagatttcccttgtgtgagcataccttccaatgct
cgtgataatgattatcagcttcttgtatggcaacaaacagcagcaaaaattggaatgcag
cggtgttctgcatcatctcagtggttgagtgagaggatctctctctcaagatatgcgcat
gtacccttgggcaattttcaatctgattggctgttatataccgcagatgtcttctattct
agagccttgcgtgatcagcaacaggtactctggatatctgatgatggtgttcctgaccta
ggaggcattggtgaagaagatacatgttttgctgatgaggtctgtcaacctgttatcaca
taccctggagcatacagaaaagtttccgtggagctaaagattcataacctggctgtagat
gctcttcttaaaagtaaccaaatcaatgaaatggaaggaggagctttattaggatttgac
caagatgtgcattctggaaatgaacagtgtggttttgatgaagctaatgcatctgctgct
gcatttcgagtcatgaaacaactgatacagaggtgccttgctgatgcagtttcctctgga
aatgtgtttgctgatgcaatactgcaacatctttatcggtggctttgcagtcctcagtca
aagcttcatgatccagctcttcaccgcatactacacaaggtcatgcaaaaggtgtttgct
ttgctgttggccgaattccgcaaattgggtgccacaattatatttgcagacttctccaag
gttatcattgacacaggaaaatatgatatatcagcagctaaagcttattgtcatagcttg
ctgaaagctctgcagagtagagagctatttgaatggattgaacttgagccgattcacttc
tggcattccttgttatttatggatcagtataaccatgggggaatcttggcggaatctcat
gaaaattcacaagaaaagtcagaagtggatattgtttctaactggaacattgctcagtat
ttacctgagaagattcaggatcattttgttttaattgtctccgagtttctgcatactccc
tggaaatatgcacaggagcaagctgcaaatagaacatcctctctggatggcagcttatgc
actccatcaatcactattaccgctgctgagaattttgaagcccatatcgtacaatatctc
aaagagcagattagctcctacttcacagaaaaacttctagggattgttcgtgatattgtg
cttcatatgaaagggttgaacggatctggaaaagttggtcaacagagtgtgcataatgtt
cctcacaaaggagatgctgcgctggagtttattaagcatgtctgtactgttctggccctt
gaccatagtattcagcacgatgttctggtattaaggaagaatctactgaaatatgtacat
gtcaaggagtttgctccagaagctgagtttcatgatccatgtccttctttcatcttaccc
aatgtgatttgcagctactgcaacgactgtagagacctggatttatgccgggactcggct
ttactggttgacgagtggtgctgtgctgtcccccagtgtgggcagccttatgatcgggag
gtgatggagaatgcacttttgcaaattgtacgacaaagagaaagactgtatcatctacag
gatctagtgtgctgtaggtgcagacaggtgaaagcagcacatttagcggaacaatgcggg
tgtgcaggctcttttaaatgcaaggaagatgtatctgagtttcgccgcaaaatgcagata
ttcttgaacatagccattcgtaaaaagtttcaactcctccaggagtgtacttcatggatc
ttacaaatcaactag

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