Gossypium raimondii: 105769340
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Entry
105769340 CDS
T04129
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
gra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105769340
09122 Translation
03013 Nucleocytoplasmic transport
105769340
03015 mRNA surveillance pathway
105769340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105769340
03041 Spliceosome [BR:
gra03041
]
105769340
Enzymes [BR:
gra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105769340
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105769340
Spliceosome [BR:
gra03041
]
Complex C
Other components
EJC/TREX
105769340
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105769340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
105769340
NCBI-ProteinID:
XP_012445349
UniProt:
A0A0D2TEF2
LinkDB
All DBs
Position
5:complement(4190306..4194462)
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVTAKVNGEGGKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVIALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILA
LTRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagggacaacgatgcttacgaggaggagcttcttgattacgaggaagaa
gaagagaaagcccctgactctgtcactgctaaagtcaatggcgagggcggcaagaagggc
tatgttggcattcacagttcaggattcagggacttccttttgaaaccagagcttcttcgg
gccattgttgactctggatttgagcacccttctgaagtgcaacatgaatgcattccccaa
gccatattgggtatggatgtcatttgccaagctaaatcagggatggggaagactgcagtt
tttgttctatcaacactacagcaaattgaacctagtccaggacaagttattgcccttgtt
ttatgccatacaagggagttagcttaccagatttgtcacgagtttgagaggttcagtact
tatctgcctgatatcaaggttgctgtcttctatggaggtgtcaacatcaaagttcacaaa
gatctactgaaaaatgaatgcccccacattgttgttgggacacctggaaggatattggct
cttactagagacaaggatctttctttgaagaatgtgagacatttcattcttgatgaatgt
gacaaaatgcttgaatcacttgatatgaggagagatgtgcaggagattttcaagatgacc
cctcatgataaacaagtcatgatgttttctgccacgctcagcaaagaaattcgcccggtt
tgcaagaaatttatgcaagatccaatggaaatttatgttgatgatgaggccaagttgacc
cttcatggtcttgtacagcattatatcaaattgagtgagatggagaaaaatcgcaagttg
aatgaccttcttgatgctttggacttcaaccaagttgttatctttgtcaaaagcgtgaac
cgtgcagctgagttgaacaagttacttgttgagtgcaattttccatccatatgcattcat
tctggcatgtcccaggaagaaaggttaactcgctacaagggtttcaaagaggggcataaa
agaattcttgtggccacagatttggttggaaggggaattgacattgaacgtgttaacatt
gtcatcaactatgacatgcctgattctgctgatacatacctgcacagggttggcagagct
ggtaggtttggcaccaagggtcttgcaattacgtttgtttcttctgcttcagattctgat
gtgctcaaccaggtccaagagaggtttgaggtggatataaaggagcttcctgagcagatt
gatacatctacatacatgccgtcataa
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