Gossypium raimondii: 105769433
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Entry
105769433 CDS
T04129
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
105769433
Enzymes [BR:
gra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
105769433
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
105769433
NCBI-ProteinID:
XP_012445515
UniProt:
A0A0D2S6E9
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Position
5:17972988..17979250
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AA seq
675 aa
AA seq
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MTSTLRRIIDCFSDCSGCKTCKGNARQDMLNMNQDTNCTPMLTQGVRLHIQDRYVVMDNG
IVQVSLSKPGGIVTGIRYNGIDNLLEVRNKETNRGYWDLHWNEIGGKGIFDVIQGTSFRV
IVENEEQVEISFTRTWNHSLEGKYIPLNIDKRFIMLRGSSGFYSYAIYEHFREWPGFELG
ETRITFKLRKDKFQYMAVADNRQRYMPFPDDRSNGRGIPLAYPEAVLLVNPLDQRLTGEV
DDKYQYSCENKDLRVHGWICFDPPVGFWQITPSDEFRSGGPLKQNLSSHVGPTTLAMFLS
SHYAGKYMVPQFEAGEPWKKVFGPIFMYFNSAAYGNDPLLLWEDAKIKMMVEVQSWPYSF
PASEDFPKSEQRGNANGRILIQDRYISNDCVIASGAYVGLAPPGDAGSWQMESKNYQFWT
QANENGFFSIRNIRPGDYNLYAWVPGFIGDYRHEAVITIISGCNIEMGDVIYEPPRDGPT
LWEIGIPDRSAAEFYVPDPDPKYINRLFVNHTDRFRQYGLWERYTELYPEGDLVYKIGVS
DYRKDWFFAQVVRKIGDNAYQGTTWKIKFELDNVDWNGIYKLRVALASATLAELQVRVND
PNSNRPLFTTGLIGRDNAIARHGIHGIYKLYNVDIPGTRFVKGENTIFLKQPRCNSPFQG
FMYDYVRLEGPPTPC
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcacactgcggagaatcatagattgtttcagtgactgtagtggctgtaaaaca
tgtaaaggaaatgcaaggcaagatatgttgaacatgaatcaggatacaaattgtacccca
atgctgactcagggagtccgactgcatattcaagaccgttatgttgtgatggataatggc
atagttcaagtctcactatcaaaaccagggggtattgttacgggaatacggtataatggg
attgacaatttgcttgaagttcgaaacaaggaaactaatagagggtactgggacctgcac
tggaatgaaataggaggcaagggaatatttgatgtgatccaaggaacaagttttagagtt
atagtggaaaatgaggaacaagttgagatctcattcacaagaacttggaatcactccctg
gagggaaagtacattcccctaaatattgataaaaggtttataatgcttcgtggttcatct
ggcttttactcctatgccatctatgagcatttcagggaatggcctggttttgagcttgga
gaaaccagaattactttcaagctcagaaaagacaagtttcaatacatggctgtagcagat
aacaggcaaagatacatgcccttccctgatgaccgatcaaatggacgaggcatacctttg
gcttatccagaagcagtcctacttgtcaatcccctagatcagaggctaacaggagaggtg
gatgacaagtaccagtattcatgtgagaataaagatcttcgggttcatggttggatctgc
tttgatccacctgttgggttctggcaaatcacaccaagtgacgagtttagatctggtgga
cctcttaaacagaacctaagctcacatgtaggacccaccactctggctatgtttcttagt
tcacattatgctgggaaatatatggttccacaatttgaagctggggagccatggaagaaa
gtttttggccctatttttatgtattttaattccgcagcctatggaaatgacccacttttg
ctgtgggaggatgctaagatcaagatgatggttgaagttcaaagctggccatacagtttc
cctgcttcggaggatttcccaaagtctgaacaacggggtaatgctaatggcagaatatta
atccaagacaggtatatcagcaatgactgcgtaatagctagtggtgcatatgttggcttg
gctcctccaggagacgcaggatcatggcaaatggaaagcaagaactatcaattctggacc
caagcaaatgagaatggctttttctctattagaaatatacgccctggtgactataatctg
tatgcatgggtccctgggtttattggagattaccgacacgaagctgtcattaccataatt
tcaggttgtaacattgaaatgggtgatgtgatatatgaacctccaagagatggaccaaca
ttgtgggaaataggcatccctgatcggtcagctgcggagttctatgttcctgatcctgat
ccgaagtatatcaataggctttttgtcaaccatactgacaggtttaggcagtacgggttg
tgggagagatatacagaactatatcctgaaggagacttggtttacaaaattggtgttagt
gactacaggaaagattggttctttgcacaggtggtcaggaagataggcgataatgcatat
caaggaactacatggaaaatcaagtttgaacttgataatgttgattggaatggtatctac
aaattgcgagtggcacttgcatcagctactctagctgaattgcaggttcgggttaatgac
ccaaattcaaatcggcctctgtttacaactggactgatagggagggacaatgcaatagcg
agacacgggattcatggaatctacaagctgtacaatgtggacatacctggtactcgattt
gttaaaggggaaaataccatcttcttgaaacaaccaagatgcaacagtcctttccaagga
ttcatgtatgactacgtccgtttagaaggtcccccaactccatgttaa
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