Gossypium raimondii: 105769484
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Entry
105769484 CDS
T04129
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gra04121
]
105769484
Ubiquitin system [BR:
gra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
105769484
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
ANAPC3
WDR90_beta-prop_4th
TPR_2
TPR_1
Beta-prop_IFT140_1st
GEMIN8
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
105769484
NCBI-ProteinID:
XP_012445606
UniProt:
A0A0D2USL3
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Position
5:18348247..18358582
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AA seq
758 aa
AA seq
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MEQWPFHDGNVHNLLVNRRIDFGHDVGHSLQMHSSLIRRLSMEQELEGHQGCVNAVAWNS
NGSLLISGSDDALINIWSYSGRKLLHSIETGHSANIFCTKFIPETSDELVASGAGDAEVR
LFNLSRLNGRGFNDGAITPSALYQCHTRRVKKLAFEVGNPNMVWSASEDGTLRQHDFREG
TSCPPAGSSHQECRNVLLDLRYGAKRSLADPPRLTLALKSCDISSTRPHLLLVGGNDAFA
RLYDRRMLPPLTSCRKRMLPPTCVNYFCPMHLSDRGRSSLHLTHVTFSPNGEEVLLSYSG
EHVYLMDVNHASGSSMQYTSGDASKLMTFTPVLNKLEHRPPLSGVFQNGLRSRGKTAAGI
EKCRMLVEIAKRSLDNGTNIFHAIEACNEVLDGHGIDIGPTLRLECFCTRAALWLKRKWK
NDAHMAIRDCHNARRIDSSSFRAHYCMAEALEQLGKHKEALDFAVAAQYLSPYDTMAAER
VENIKKHLAAAEAEKSNKASDGSHKGEPRTGRVLSLSDILYRSEANSDALQDGPRSERED
SDFNEELELDFETLISGDEGRDVESNIFHGSLNLRIHRRGDSTRETGACGSPSSSSQNGV
AYQPEAVIDMKRRYAGHCNVGTDIKQASFLGQRGEFVASGSDDGRWFIWEKQTGKLIKML
LGDGVVVNCVQSHPFDCFVATSGIDNTIKLWTPSAAVPSMAAGGSAGPEAANVLEAMESN
QQKLCCNREAFLPFELLERFRMHDFSEGSLQPFECAQT
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtggccgttccacgacggcaacgtgcacaatctactcgtcaacaggcgcatc
gactttggccacgatgttggtcatagtttgcagatgcattcgtctctgattcgtaggctt
tcaatggaacaagaattggagggacatcagggctgtgtaaatgctgtggcttggaattca
aatggttcacttttgatttctggttctgatgatgcactgataaatatttggagctactct
ggtcgaaagcttttgcattctatagagactggtcattctgctaacatattctgtacaaaa
ttcattcctgaaacttctgatgagcttgtagcctctggagctggggatgcagaggttcga
ttatttaacttgtcccgcttaaatggccgagggttcaatgatggtgctattactccgtca
gcactctatcagtgtcacacaagaagagttaaaaaattggcgtttgaagttggaaacccc
aatatggtatggagtgctagtgaggatggaactctgagacagcatgactttcgagagggc
acttcctgtcctccagctggatcttctcaccaagaatgtcgcaatgttctacttgactta
cgttatggggcaaagaggtcactagctgatcctcctaggcttactctggccttgaaatca
tgtgatatcagttctactagacctcatttactccttgttggtgggaatgatgcatttgcc
cggctatatgatagaaggatgctgccaccattgacctcctgccggaaaagaatgttacca
cctacttgtgttaattatttctgcccaatgcatctctctgaccgtggacgttcaagtttg
cacttaactcatgttaccttcagccctaatggagaagaggttcttcttagctatagtggg
gagcatgtatatctaatggacgtaaatcatgctagtgggagttcaatgcaatatacctca
ggagatgcttcaaaattgatgaccttcactcctgtactaaataaactagagcaccgacca
cctctttccggcgtcttccaaaatggtctccggagtagaggcaaaactgctgctggaatt
gaaaaatgcaggatgttggttgaaattgctaagagatcattagacaacgggacaaatatt
tttcatgcaattgaggcatgcaatgaagtcttggatggacatggtattgatattgggccc
acactcaggcttgaatgcttttgtacacgtgctgccttgtggcttaagcggaagtggaaa
aacgatgcccatatggccattagagattgccataatgctcgaagaatagatagttcttcc
tttagagctcattattgtatggcggaggctttagaacagttgggaaagcataaagaagca
ttagactttgctgttgcagcacaatatttatctccatatgatactatggccgctgagaga
gtggagaacattaaaaaacatcttgctgctgctgaggctgaaaaaagtaacaaggcaagt
gatggatcacataagggtgaacctagaactggaagggtattgtcgttgagtgacatacta
tatcgctcagaagctaacagtgatgctttacaagatggtccaagatctgaaagagaagac
tctgattttaatgaggagctggaattagattttgaaactttaatatcaggtgatgaaggg
cgtgatgttgaatccaacatatttcatggaagtttaaatcttagaattcatcgaagaggt
gattcaactagagaaactggtgcatgtggatctccttcctcgtcatcacaaaatggagtg
gcttatcagcccgaggcggtaattgatatgaagcggagatatgctgggcactgcaatgtt
ggaactgacatcaagcaggcgagtttccttggtcagagaggtgaatttgttgctagcggc
agtgatgatggaaggtggtttatttgggagaagcagactggtaaattgataaaaatgctt
cttggagatggcgttgttgtaaactgtgttcagagccatccatttgattgctttgtggca
actagtggtattgacaacacaataaagttatggactccaagtgctgctgtcccatcaatg
gctgctggtgggtcagcagggccagaagctgcgaatgtgttagaggcaatggaaagtaat
caacagaaattatgttgtaatcgtgaagctttcttgccctttgaacttttggagcgattt
cggatgcatgacttttctgaaggatccttgcaaccttttgagtgtgcacagacatag
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