Gossypium raimondii: 105769886
Help
Entry
105769886 CDS
T04129
Name
(RefSeq) cleavage stimulating factor 64 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
gra
Gossypium raimondii
Pathway
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105769886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105769886
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105769886
U7-dependent histone pre-mRNA processing factors
105769886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
RRM_10
Motif
Other DBs
NCBI-GeneID:
105769886
NCBI-ProteinID:
XP_012446289
UniProt:
A0A0D2QNG4
LinkDB
All DBs
Position
5:21618044..21624652
Genome browser
AA seq
518 aa
AA seq
DB search
MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQGRGGPGLATNFDPQKQLGGQAVHGE
SFHLQPIGLHSAITAAALMAEALGGVQQNQNALLSQPVPTSDPLTLHLARMSRNQLNEIM
SELKKMATQNKELARELLLSKPQLLKAIFQAQIMLGMVTPQVLQMPNIRQPLGQPAQIPL
QDGQHSLQPTAQTLSPMVQAGLIPKVQSQIASVPLNSLARNQVSATLQSTLQPRTQLPQH
SSNYVLPPAAAHSGVPKIPSLNTSVRPQIQVANSSSLNQQLQPSLLHSGQLATANLSHSS
RMVSPNVVMQSAPLPHPSLSDTSFQPGPSITPGIAEKSNIVQNHSEAISQPPKMVKLDGG
KSSSSSVGLNVTNVSGSKTLQTFGVDSAPVNQVPRAQEVQYAEKQISQPQLAPDVESVLL
QQVLNLTPEQLSSLPPEQRQQVIQLQQALRQEHMQQPS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcctcttctcagcatcgctgcgttttcgttgggaatataccatatgatgctactgag
gaacagcttatagaaatctgcagggaggttggcccagttgtttctttcagattggttatt
gatagagaaactggtaaaccaaaaggttatgggttctgtgaatacaaggatgaggagaca
gctctaagtgcacgaaggaatcttcaaggttatgagatcaatggccggcagttgcgagtt
gattttgctgaaaatgacaaaggctctgatcgaaaccgagaacagggccgtggtggacct
ggactggcaacaaactttgaccctcaaaaacaactaggaggccaagcagtccacggcgaa
tcttttcacctgcagcctattggtctccattcagctataactgctgctgctctcatggct
gaagctcttggtggtgtgcagcaaaatcaaaatgctttgcttagtcagccagtaccaacc
agtgacccactaacactccatcttgccagaatgtcaaggaaccagctgaatgaaattatg
tctgagctgaagaaaatggctacacaaaataaggaactagctcgtgagctattgctttca
aaacctcagttgctgaaagctatttttcaggctcaaattatgcttggaatggttacccct
caagtgttgcagatgccaaacataagacagcctcttggtcaacctgcacagattccatta
caggatggccagcatagtctgcagccaacagcacaaactctttctccgatggttcaggct
ggcttgattcctaaagtacaaagtcaaatagcttctgtgcctcttaattctttagctcgc
aaccaagtttccgctaccctacaatcaactttgcagcctcggacacagcttccacaacat
tccagcaattatgttctaccaccagccgctgcacattctggagttcccaaaattccttct
ttaaacacctctgttagaccacaaattcaggtagcaaattcttcatccttgaaccagcaa
ttgcagccgtcattgctgcactcaggacagcttgcaactgctaatttaagtcacagcagt
cggatggtctcgccaaatgttgtcatgcaatcagctcctctgcctcatccttccttatca
gataccagcttccagcctggtccctcaataacacctggcatcgcggagaaatcaaacatt
gttcaaaatcattcagaagcaataagtcagcctccaaaaatggtgaaattagatggggga
aagagcagttcttcctcagttgggttgaatgtgaccaatgtaagtggatctaaaacattg
caaacatttggtgttgattcagcacctgttaatcaagtacctagagcacaagaggtgcaa
tatgctgaaaagcagatttctcagccacagctcgcacctgatgttgagtccgtcttactg
cagcaggtgttaaacctaacaccagaacagctgagttcattgccacctgaacaacgtcaa
caggtcattcaactccaacaggcacttcggcaagagcatatgcagcagccatcatag
DBGET
integrated database retrieval system
