Gossypium raimondii: 105770225
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Entry
105770225 CDS
T04129
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gra
Gossypium raimondii
Pathway
gra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105770225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105770225
03036 Chromosome and associated proteins [BR:
gra03036
]
105770225
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
105770225
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
105770225
PBAF complex
105770225
GBAF(ncBAF) complex
105770225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DUF7685
CLP1_P
Zn_ribbon_2
DUF3306
Motif
Other DBs
NCBI-GeneID:
105770225
NCBI-ProteinID:
XP_012446779
UniProt:
A0A0D2TWN8
LinkDB
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Position
5:24335465..24342217
Genome browser
AA seq
773 aa
AA seq
DB search
MPASSPSDGRGRWKRRKRDRRPKHLQEDNDVPEEDVEEEDNNNEDIDNHRDNNSGDDAGG
GFRDPSLLGSSECEVLADGGVRISEFPPVVKRTVNRPHGSVMAIVAAERAGLVGDSKGHQ
QVALAVLENVSYGQLQSVSTEAPIVEPEKYVITPPPIMEGRGVVKRFGSRVHILPMHSEW
FSPASVHRLERQVVPHFFSGKSPEHMPEKYMECRNHIVAKYMDNPLKRITVSDCQGLIDG
ISNEDLTRIVRFLDHWGIINYFAAAPSHEPWSAGSYLREEPNGDVHVPSAALKSIDSLIK
FDKPKCRLKAADVYSSLSCHADISDLDNRIRECLDENNCTSCSQPVATSYYQSQKEVDVL
LCSDCFHDGRFVSGHSSIDFVRVDSTKDYGDLDGDSWNNQETLLLLEAMEIYNENWNEIA
EHVGTKSKAQCILHFVRLPMEDGLLENLEVPSMPKSTIVANGDSQRLHSNMNGSLPGPSL
QDADYQSKVPFENSGNPVMAMVAFLASAVGPRVAAACAHASLAALAEDVDKEGSGHGNRM
NMESVHSREGGLHGSVHQKENSAIHSFGQNEAEDHPLSAEKVKAAAKAGLAAAAMKAKLF
ADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKECEQVEKTRQRFAAERARIVS
AQFGTTGVASQMSVPVISSPMVNNIGNNRQQVLSASPSTPSNSGYVNNQPVNPHMPFMQR
QPMFPMGPRMPLTAMQASTSAPPNVMFNSRGNAQPTLNHPLMRSVSGAGSGLG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcttctccttcagatggtcgaggtcggtggaagcggcggaagcgagaccgg
agacccaagcatctccaagaagataacgatgtcccggaggaagatgtagaagaggaagat
aacaacaacgaggacatcgataaccaccgcgataacaattccggggacgatgccggaggg
ggatttagggatccgtctttgctggggtccagcgagtgtgaggttctggctgatggtgga
gttcgcatctcggagttcccccccgtggtcaagcggactgtgaaccgtcctcacggttct
gtgatggcgatcgtggcggctgagcgggccggtttggttggggatagcaagggccaccag
caggtggctctggcggttttggagaacgtttcgtacgggcagttacagtcggtttcgact
gaagctcccattgttgaaccggagaagtatgtgattacacctcctccgataatggagggg
cgtggcgttgttaagaggtttgggagtagggttcatatcctgccaatgcattcagagtgg
ttctcaccagcctccgtgcatcgactagaaagacaagttgtgccacattttttttctgga
aaatcacctgaacatatgcccgaaaaatatatggaatgtagaaaccacattgttgccaag
tatatggataatccattgaagagaattacagtttctgattgccagggattgatagatgga
atcagtaatgaggatttaactcgaattgttcggtttcttgatcactggggaatcatcaat
tattttgcagctgcaccaagtcatgagccttggagtgctgggtcctacttaagggaggag
ccaaatggcgatgttcatgtgccatcggctgcattaaagtctattgatagcttgatcaaa
ttcgacaagccaaaatgtaggctcaaggcagctgatgtttattcatcattgtcatgtcat
gctgatatctctgacttggacaatagaatacgagagtgcctagatgaaaacaattgcact
tcatgttctcagcccgttgccacttcatattatcagtcacagaaggaggttgatgtactg
ctgtgctctgattgcttccatgatgggagatttgtttctggtcattcaagcatagatttt
gttagagtagattcaacaaaagattatggggacctagatggagatagttggaacaaccag
gaaactttactgttgcttgaggcaatggaaatttacaatgagaactggaatgaaatagct
gagcatgtgggcactaagtcaaaagcacaatgcatacttcattttgtacgtctacccatg
gaggatggcctattggaaaatttggaagttccgagcatgcccaagtcaacaattgttgca
aacggagacagccaaagattacactcaaacatgaatgggagtctaccagggcccagcctt
caagatgcggattatcaaagcaaggttccttttgagaattctgggaatccagttatggct
atggttgcttttctggcatctgctgttggaccaagagttgctgctgcctgtgcccatgca
tccttggcagcattggctgaagatgtagataaggaaggttcgggacatggtaataggatg
aatatggagagtgtacatagtagagaaggtggtttacatggttccgttcatcaaaaagag
aactcagcaatacattcatttggtcaaaatgaggcagaggatcatccactatctgctgaa
aaagttaaagctgctgccaaagctggccttgcagctgcagctatgaaggcaaaactgttt
gcggaccacgaggaacgagaaattcaaaggttatcagccaatatcataaatcatcagttg
aagagattggagctgaagcttaagcagtttgcagaagttgaaacgttactcatgaaagaa
tgtgaacaagtggagaaaacaaggcaaaggtttgctgctgagagggctcgaattgtatca
gctcaattcggaaccaccggagtcgcttcacaaatgagtgtacctgtgatttcttctccc
atggttaataacattggcaacaacaggcaacaggtattgtcagcctcaccttcaacgcca
agcaattctggatatgttaacaaccaaccagtaaatccccatatgccattcatgcaacgc
caaccgatgtttcctatgggtccgaggatgccccttacagccatgcaagcatccacatca
gctcctcctaatgtcatgttcaactcccgagggaatgcacaaccaactcttaaccatcca
ctaatgaggtcggtttccggggctggatctggtctaggttga
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