Gossypium raimondii: 105772183
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Entry
105772183 CDS
T04129
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gra03021
]
105772183
03036 Chromosome and associated proteins [BR:
gra03036
]
105772183
Transcription machinery [BR:
gra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
105772183
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
105772183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
Tex_central_region
HHH_9
HTH_44
HHH_3
S1
Tex_N
Motif
Other DBs
NCBI-GeneID:
105772183
NCBI-ProteinID:
XP_012448951
UniProt:
A0A0D2VD87
LinkDB
All DBs
Position
6:56368070..56376939
Genome browser
AA seq
1643 aa
AA seq
DB search
MGKNVVSDEEELELDEDGEPIEGDTLNGRDPDDDDEEEDDEGQDEYENDGFIVDDVEDEE
VDEAEEREDSDEERRKKKKKRKKKEAEDLDEDDYELLRENDVNVPKGSKKFKRLKKAQRD
LDGIRYGLSDDEFDGSMKGGATAEEKLKRTLFGDDDGQPLEDLPEDEEQIEEEEDGDMGE
EDEMADFIVEEDDVPGASVRRKKMKNKKSRHAFDVSSSALKEAQDIFGDVDELLQLRKQG
LDYSDQKERRLEDQFEPTVLSEKYMTVKDDEIRTIDLPERMQISEESTGSPPMDEESIIE
ESNWMHKQLTSGAVPLFGKERMDLSINKDDIMRFLDLTHVQKLDIPFIAMYRKEQCLSLL
QDPGPHEVDDVDQEKSDKKPTIKWHKVLWAIQDLDRKWLLLQKRKSGLQSHYSKRFEEES
RRIYDETRLNLNQQLFESILKDLKDAESEREVDDVDAKFNLHFPPGEVGADEGQYKRPKR
RSQYSICYKAGLWEVASKFGYSAQQLGSQLSLEKLPVDELEDPKEIPEEMASNFTCAMFE
TPQSVLKGARHMAALEISCEPSVKKYVRNIYMENAVVSTSPTSDGKIAIDSFHQFAGVKW
LREKPLSKFEDAQWLLIQKAEEEKLLQVTFKLPEKIMDDLIKECNERYLSNGVSKSAQQW
NEQRKQILNDALFGFLLPSMEKEARSLLASGAKNWLLLEYGKDLWNKVSVGPYQKKENDI
NSEEEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQQ
RVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEENPRDVGHEMDELSIVYGDES
LPRLYENSRISADQLPGTSGIVKRAVALGRYLQNPLAMVATLCGPEKEILSWKLNPMENF
LTADEKYSMIEQVLVDVANQVGLDVNLAASHEWLFAPLQFISGIGSRKAASLQRSLVRVG
TIFSRKDFLQAHGLGKKVFVNAVAFLRVRRSGLAANSSQFIDLLDDTRIHPESYLVAQEL
AKDVYDEDFKGDNDEDDALEMAIEHVRDRPSLLKSLRLDNYLESKKRGNKRETFFDIRRE
LIQGFQDWRKPYKEPSQDEEFYMISGETEDTLAEGRVVQATVRRVQGGRAICALESGLTG
MIMKEDYADDSRDIVELSDRLHEGDILTCKIKSIQKNRYQVFLVCKDSEMRSRHQHVQNL
DPYYHEERSSIQSDQEKARKEREMAKKHFKPRMIVHPRFQNITADEAIEYLSDKDPGESI
IRPSSRGPSFLTLTLKVYNGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEV
MDRYVDPLVSHLKAMLSYRKFRKGTKVEVDELLKIEKSEYPMRIVYCFGISHEHPGTFIL
TYIRTSNPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQKHIDDPQHESAQSIRSVAAMVP
MRSPAADGSSGGSMGGWKGHSHDRGQSSTPGSRTGRGRDGHQSGAPRGGRGRGRGGSYNS
NRGRNNGQDSSYDDTPKWDSGSSKKGDDGGWGSFPGAKVQNSPGTDAFPGGWGASGTESG
GGSGSGWGASGTESGNGNGSGSGWGGSGGGSGWGASGTESGGGNGSGSGWGGGSGGWDQA
SGGTDNGGSGWGSAPKSGNSGGW
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaaacgtggtgtctgacgaagaggagttggaactcgacgaagatggagagccc
attgagggagacacactcaatggccgcgaccctgacgacgacgacgaagaagaagacgat
gaggggcaagatgaatatgagaatgatggattcatagttgatgatgtggaggatgaagag
gtagatgaagctgaagagagggaagatagcgatgaggagaggcggaaaaaaaagaaaaaa
agaaagaagaaggaagctgaggaccttgatgaagatgactatgagctcctccgggagaat
gacgttaatgtaccaaagggtagcaagaaatttaagcggctaaaaaaggctcaaagggat
ttagatgggatacgatatgggctctctgatgatgagtttgatggtagcatgaagggtgga
gcaactgctgaggaaaagcttaagcgtaccttatttggcgatgatgatgggcaacctctt
gaagatcttcctgaagatgaagaacaaatagaagaggaagaggatggagatatgggtgaa
gaagatgaaatggcagactttattgtagaagaagatgatgtgcctggggcttctgttaga
cggaagaagatgaagaataagaaatcaaggcatgcatttgatgtttcgtcatctgcttta
aaggaagctcaagatatatttggtgatgttgatgaactcctgcagctacgcaaacaggga
ttagattatagtgatcagaaagaaaggagacttgaagatcaattcgaacccactgttctt
tctgaaaagtatatgacagtaaaggatgatgaaattcggacgattgatcttccagaaaga
atgcagatttctgaggaaagcactggcagtcctccaatggatgaagagagcataatagaa
gagagcaactggatgcataaacagcttacaagtggtgcagtaccgttatttggtaaagaa
aggatggatctttctataaacaaggatgacatcatgaggtttttggacctaacacatgtg
cagaaattagatattccctttattgcgatgtatcgcaaggagcagtgcctaagtctgctg
caagatcctgggccacatgaggttgatgatgttgatcaggaaaaatctgataaaaaacct
acaataaagtggcacaaggtactttgggcaattcaggatttggaccggaaatggctgctt
cttcaaaagaggaagagtggccttcagtcacattatagtaagcgatttgaagaagaatct
cgtcggatatatgatgagacaagacttaacttgaaccaacaactttttgagtcaattctt
aaagatctcaaggatgcagaatcagaaagggaagttgatgatgttgatgccaagtttaac
ttgcatttcccaccaggtgaggttggtgcagatgaaggtcaatataagaggccaaagagg
agatcacaatatagtatttgctataaggctggtctctgggaggttgcaagcaagtttgga
tacagtgctcagcaacttggatctcagctatctcttgaaaagttgcctgttgatgagttg
gaagatcctaaggagataccagaagagatggcttcaaactttacatgtgcaatgtttgag
actccacaatctgtcctcaaaggagccagacatatggcggcgcttgagataagttgtgag
ccatctgtcaagaaatatgttcgtaatatttatatggagaatgctgtagtatcaaccagt
ccaacatctgatggaaaaatagccatagattctttccatcagtttgctggtgttaagtgg
ctgcgggaaaaaccattgagcaaatttgaggacgcacagtggcttctaatccagaaggct
gaagaggagaagcttcttcaagtaacttttaagctgccagaaaaaattatggatgacttg
attaaagaatgtaacgaaagatatctcagtaatggcgttagtaaatctgctcaacaatgg
aatgaacagagaaagcagatactgaatgatgctctttttggtttccttttgccatcgatg
gagaaagaagcgagatccttgttggctagtggagctaagaactggttacttttggaatat
ggcaaggatttgtggaataaagtttccgtggggccttatcaaaagaaggaaaatgatatt
aattctgaagaggaagctgcaccacgtgtcatggcatgctgttggggccctgggaagcct
gcaactacttttgtgatgttagattcatccggagaggtgcttgatgtgctttacactggt
tctcttacattacggtctcaaaatgttaatgaccagcaacgcaagaaaaatgatcagcag
cgtgttttgaagtttatgactgatcatcaaccacatgttgttgttcttggagctgtgaat
ttgtcttgtacccgtttgaaagatgatatttatgagattatttttaagatggtggaggaa
aatcctagagatgttgggcatgaaatggatgagctgagcattgtatatggggatgagtct
ctaccccgtctctatgaaaattctcggatttcagcggatcagttacctggcacatcaggc
attgttaaacgggctgttgctcttgggcgttatcttcaaaatccactggcaatggttgca
actctttgtggccctgagaaggaaatattgtcttggaagcttaatcctatggagaacttt
ctaacagcagatgagaagtatagcatgattgaacaggttttggttgatgtcgcaaaccag
gttggccttgatgttaatttggctgcaagccatgaatggttgtttgctcctttgcaattc
atttccggaattgggagtagaaaggcagcatcactgcagaggtcattagtaagagttgga
acaattttcagtcgaaaagactttttgcaagcccatggacttgggaagaaggtttttgtc
aatgcagtagcctttctacgtgtccgtcggagtgggcttgctgccaatagcagccagttc
attgatttgttggatgacactagaatacatccagaatcttatcttgttgcccaggaattg
gccaaagatgtttacgatgaggattttaaaggtgacaatgatgaggatgatgcattggaa
atggcaatagaacatgttagggaccgaccaagtttgttaaaaagccttcgtcttgataac
tatctagaaagcaagaagcgcgggaataagagggagaccttttttgatataagaagggaa
ttaattcagggctttcaggattggcggaaaccatataaagaaccaagtcaagatgaggag
ttctacatgatttcaggtgaaactgaggataccctggcagaaggccgggttgtgcaagca
acagttcgcagagtgcaaggtggacgggctatttgtgcacttgaatctggattaactggg
atgattatgaaagaagactatgcagatgactcgagagatattgtcgagttgtctgatagg
ctgcatgaaggtgacatcttgacatgcaagatcaaatcaattcaaaagaataggtatcag
gtgttcctggtttgtaaagacagtgagatgagaagccgacaccagcatgtccagaacctt
gacccttactaccatgaggagcgaagcagcatacagagtgaccaagagaaagctcgtaaa
gagagggaaatggccaagaaacattttaagccgaggatgattgtccatccacgcttccaa
aatattactgctgatgaagctattgagtatttatccgataaggatcctggagaaagcatc
atccgtcccagttctcgtgggccttcttttctaaccttaactctcaaagtttataatgga
gtttatgctcacaaggatatagttgaaggtggaaaagaacacaaggacattaccagcctg
ctccgcattgggaagacgttgaaaattggggaagacacttttgaggatttggacgaggta
atggatcgatatgtcgacccccttgtgtctcatctgaaggcgatgctgagttatcgcaag
ttcaggaagggaactaaagtagaggttgatgagcttctaaagattgagaaatcagagtat
cctatgagaatagtgtattgctttggcatttctcatgaacatcctggcacttttattctt
acttatatacggacttcgaatccacatcacgagtatattggcttatatcctaagggattc
aagttccgaaaaaggatgttcgaggacattgatcgtctggttgcttatttccagaagcat
attgacgatccacagcatgagtcagctcaatcaattagatcagttgcggcaatggtacca
atgcggagccctgctgctgatggctcttctgggggatctatgggtggttggaaagggcat
tctcatgacaggggtcaatcttccactccaggttctagaacaggtcgtggccgagatggg
catcaaagtggtgctccacgtggtggtcgtggacgtggtaggggtggctcgtataacagc
aaccgggggcgtaacaatgggcaagattcatcttacgatgatacccccaaatgggattca
ggtagcagcaagaaaggggatgatggtggttggggcagtttcccgggagctaaagttcaa
aactctccaggtacagacgctttccctggtggttggggtgcttctggaactgaaagtgga
ggtggcagcggcagtggctggggtgcttctggaactgaaagtggaaatggcaatggcagc
ggcagtggctggggtggcagtggcggtggcagtggttggggtgcttctggaactgaaagt
ggaggtggcaatggcagcggcagtggttggggtggtggtagtggaggttgggaccaagca
agtggtggtactgacaatgggggttctggctggggatctgctcccaagagcggtaattct
ggtggttggtga
DBGET
integrated database retrieval system
