Gossypium raimondii: 105772934
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Entry
105772934 CDS
T04129
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
gra
Gossypium raimondii
Pathway
gra03013
Nucleocytoplasmic transport
gra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105772934
03015 mRNA surveillance pathway
105772934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gra03019
]
105772934
Messenger RNA biogenesis [BR:
gra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105772934
mRNA cycle factors
P-body specific factors
105772934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
MIT
Motif
Other DBs
NCBI-GeneID:
105772934
NCBI-ProteinID:
XP_012449899
UniProt:
A0A0D2VCY0
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Position
6:55131237..55143515
Genome browser
AA seq
1201 aa
AA seq
DB search
MDNQEDESRAGGEHHGKQDDEEAVARLEEIKKSIEGKVALRQTNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEELKEGLMEELRSVNLSKFVSEAVSAICDAKLKSSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLLELYFVGVIED
NGIFINIIKDLTSTEHLKDRDATQTNLTLLASFARQGRVFLGLPVSGQEIQEEFFKGLGI
TADQKKTFRKAFNLYYDAVTELLQSEHASLRQMEHENAKILNAKGELSEENASSYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDSHTTRVTTGDDASSTSGKESSNLEAIWDDDDTRA
FYECLPDLRAFVPAVLLGESESKASEQTSKAQEQPTESSSEADQSTPVAQDAVDISADSG
TLQEGKSVEKGKDKEEKDKEKTKDPDKEKGKEKEKEKEKEKEKDTDKKGENEKEKLKGSE
GTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRM
VATLSTCMKDVPSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISSPGLVF
SCLKTCLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHS
TLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFTDLDKSSIEHVLRQLRKLPWIECES
YLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQR
RIAHMRFLGELYNYEHVDSSVIFETLYLILVFGHDTAEQDILDPPEDCFRIRMVITLLQT
CGHYFDRGSSKRKLDRFLVHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSSMEEVN
AALVELEEHEHSASTDKTVNEKHSDTEKPSSRTTSHSISTDQPSILNGSEENGGVHEEIG
DSYSESGSETIEPEGHNEDDLDEENHDDGCDTDEEDEDDGPASDEDDEVHVRQKVAEPDP
LEVASFDQELRAVVQESMEQRKLELRGRPTLNMMIPMNVFEGSIKDHHGRVVGGESGDEA
LDEEAGGSREVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRLVLE
YNDRVEEENNGLGTQTLNWPSGNSRAYGRGNSWEGSSGRSGGSRHRHHSHSGSGSYYGRK
K
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggataaccaagaggatgaatctcgggctggaggtgaacaccatggaaaacaagatgat
gaggaagccgttgcacgtcttgaggaaattaagaaatctattgagggaaaagtggctctt
cgtcaaaccaatttgaatcctgaaaggcctgactctggcttcctcaggactttggattct
agtattaagcgcaatacagctgttattaaaaaattaaagcagataaatgaagagctgaag
gaaggattgatggaggagctacgtagtgtcaatttaagtaaatttgttagtgaagctgtg
tctgctatttgtgatgccaaacttaagagttcggatatacaagctgcagtgcagatctgc
tctctgcttcatcaaaggtacaaagatttctcaccaagtctaatacaagggctcctgaaa
gtcttctttcctggaaaatctggggatgatttagatgcagacaggaacttgaaggcaatg
aagaagcgtagcactttgaaacttcttctggaactttactttgttggagttatagaggac
aatggaatctttatcaatatcattaaggatcttactagcacagagcacttaaaggaccga
gatgctactcagacaaatttgactcttcttgctagttttgctcgacaagggcgagtgttt
ctaggacttccagtgtctggtcaagaaattcaagaagagttcttcaagggccttggtatc
acagcggatcaaaagaaaacttttaggaaggcatttaatctatattatgatgctgtaact
gaacttcttcagtctgagcatgcgtcgcttcgccaaatggagcatgagaatgccaagatt
ctaaatgctaaaggagagctcagtgaagaaaatgcatcttcatatgaaaagctacgcaaa
tcttatgatcatttgtaccgcaatgtctcatctttagctgaagcacttgatatgcagcct
ccagtcatgccagaggacagtcacacaactagggttactactggggatgatgcttcatca
acatccggaaaagagtcttcaaaccttgaagctatatgggatgatgacgacactagagct
ttctatgaatgcttacctgatcttagagcatttgtcccagcagtattattgggagagtct
gagtccaaagcaagcgagcaaacgtcaaaggcacaagagcaaccaactgaatcctcttct
gaagctgatcaaagtacaccagttgcacaagatgccgtggacatttctgcagactctggc
actctgcaagaagggaagagtgtagagaaagggaaggataaagaagaaaaggataaggaa
aaaaccaaagatcctgacaaggagaaagggaaagagaaagagaaagagaaagagaaagag
aaagaaaaggatacagataaaaaaggagaaaatgaaaaggagaagctcaaaggtagtgaa
gggacaaatttggatgctctactgcaaagactcccaggttgtgtgagtcgtgaccttatt
gatcaactgacggtggagttctgttatttgaattcaaaatcaaatcggaaaagacttgtg
agagctttgtttaatgtaccaaggacttctttggagttgcttccatactactcacgcatg
gttgcaacattgtcaacttgtatgaaggatgttccctctatgctcttgcagatgttggag
gaagagttcaactttctaatcaataaaaaggatcagatgaacattgaaacaaagatcagg
aatattaggtttattggagaactttgtaagttcaaaatttcatcacctggccttgtcttc
agttgtctgaagacttgtttagatgatttcactcatcataacattgatgtcgcttgcaat
cttcttgagacgtgcggtcgttttctgtatcgttctcctgaaactaccataagaatggct
aacatgttggagatcttgatgcgcttgaaaaatgtaaaaaatttggatcctcggcacagc
acacttgtggaaaatgcttactacctatgcaaaccacctgaaagatctgcacgggtctcc
aaagtccgtcctccattgcaccagtacattaggaaattgctatttacagatcttgataag
tcttccattgagcatgtgctgaggcaacttcgtaaattaccatggattgaatgtgaatca
tatctcttaaagtgcttcatgaaggttcacaaggggaaatatggccaaattcacttgatt
gcttctctcactgctggtttgagtcgctatcatgatgaatttgctgttgctgttgttgat
gaggttttggaggagattagacttggcctggagttaaatgattatgggatgcagcagagg
cgcattgctcatatgcgctttcttggggagctatacaactatgagcatgttgattcttcc
gtcatctttgaaacactctatttgattcttgtttttggccatgatacagcagagcaagat
atcctcgatccacctgaggattgttttcgaatcaggatggttattactcttcttcagaca
tgtgggcactactttgaccgaggttcttctaagagaaaacttgatcggttcttggtacat
ttccagaggtacattcttagcaagggtgccttaccactggacattgaatttgatttgcag
gacttatttgccgaattacgtcccaacatgacccggtattcgtctatggaagaagttaat
gcagctttagtagaacttgaggaacatgaacatagtgcttcaactgacaagacagttaat
gagaagcactctgataccgaaaagccttctagcaggacgacttcccattcaatctcaact
gaccaacctagcattttgaatggttccgaggaaaatggtggggttcacgaggaaattggt
gacagttacagtgaatcagggagtgaaaccattgaaccagagggacataatgaagatgat
ttggatgaagagaatcatgacgatggatgtgatactgatgaggaagatgaagatgatgga
cctgcttcggatgaggatgatgaagttcatgtcaggcagaaggtagctgagcctgatcct
ctagaagtagccagttttgaccaggagctccgggctgtagtgcaggagagcatggagcaa
cgcaagttggagctgcggggccgacctacattaaacatgatgataccaatgaatgtattt
gagggttctatcaaagatcatcatggaagggtagtgggaggggaaagtggtgatgaagca
ttggatgaagaggctggaggaagccgggaagtgcaggtgaaagttctcgtgaagcggggg
aacaaacaacagacgaaacaaatgtatattccccgtgattgtacgctagtccaaagcacg
aaacagaaagaagctgcggagtttgaagagaaacaagacattaagaggctggtcttggag
tataatgacagggtagaggaagagaataatggacttgggacacagacattgaattggcca
agtggaaatagcagagcttatggccgtggaaactcatgggaaggatctagcggcaggagt
ggaggatcacgtcatcgccatcatagtcattcaggaagtggatcttattatggcagaaaa
aagtga
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integrated database retrieval system
