Gossypium raimondii: 105773029
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Entry
105773029 CDS
T04129
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
gra
Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:
gra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gra03036
]
105773029
Chromosome and associated proteins [BR:
gra03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105773029
microRNA pathway
RISC loading complex
105773029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
SNF2-rel_dom
SWI2_SNF2
DND1_DSRM
AAA_22
Sterile
HA2_N
Motif
Other DBs
NCBI-GeneID:
105773029
NCBI-ProteinID:
XP_012450063
LinkDB
All DBs
Position
6:15020937..15031995
Genome browser
AA seq
1673 aa
AA seq
DB search
MSLLKSHSTPQFSPVILTKLIEEQGEPLKRSFSEANSDPPDWMVLDDNETAKEEDPSSSS
KPKDFNPRGYQLQVYEVAKGRNIIAVLDTGVGKTMIAVMLIKDFVQAIESTESKKLIIFL
APTVHLVNQQFEYVKDHTSLEVEQYYGAKGVDEWTLDCWEKETKEHDVLVMTPQILLDAL
RKAFLSLEMVSLMIIDECHRATGNHPYAKIMKEFYHKSNNKPKIFGMTASPVVSKGVLSS
NNCDGQMSELECVLDSLIYTIEDRTEMEACVPSAKESCRFFDPAQFSSLDLKAKVEASWL
KTDASLSNLQSSLQTSYKGMDDKLKNLRKRLSNDHAKVLHCLDNLGLICAYEAVNICLEN
ILDTTEESKAYRESVLQYKNFLEEVQCRIGESLPLGDKNFLNTGFDYLKAVDLGYISPKL
HELLQLFQSFGETRQVLCLIFVERIITAKVIERFAKKVSCLSHFMVSYMTGSNTSVDSLA
PKMQKETLESFRSGKVNLLFTTDVVEEGIHVPNCCYVIRFDLPKTVRSYVQSRGRARQNN
SEFIMMLERGNVKQRNQLYDIIRSEYSMTNSAIKRDPDSDPCLLKDHTFEETNVFIVDAT
GASVTADSAVSLIHKYCGKLPGDKYYTPKPNFQFTSSEGLYKCKLTLPVNAAVQTIVGPL
SRNSHLAKQLVCLEACKQLHQMGALDDHLTPSIEEPSENACISKGKDSGAGAGTTKRKEL
HGTTCIQALCGSWGEKSDDAVFFAYKFDFKCNIITVVYSGFVLLIESKLADDVGNTEMDL
FLIGKMVKASVSSCGQVYLNAEQMVKAKRFQEFFFNGLFGKLFVGSKSSGAPREFLLRDK
TSSLWSPSHMYLLLPLEDNSTDELRIHWPGITACTLAAEFLNKNSLLGTEQSDDDGSNPS
LNSTGSPVTYCKETNIIRFANSSVDANSLRNTVVLAIHTGRIYCIIEAVSDKTAESSFAE
TVDTVSSEFATFYEYFYKKYNIVLKHPGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAG
VVNEKPRFHVHMPPELLLVLDVPVSVLKSLYLLPSLMHRLESLMLANQLREEINFCSSNI
DIPSSMILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLA
VCNSTLHKLGTDHKIQGYIRDSAFDPRRWVAPGQRVLRPVPCKCGVDSLEVPLDKKFQTE
DPKVKVGKSCDRGHRWLCSKTISDCVEALIGAYYLSGGLVAALHVMKWLGIDAELDPLVV
AEVINQASLRTYVPNYEIHMIESKVGYNFSVKFFLQEALTHESLHESYCYQRLEFLGDSV
LDLLITQYLYNHHTDIDPGELTDLRSASVNNENFAQVAVRHDLHKHLQHCSTLLSNQISE
YVRSFTESDNTTRLDPSIKGPKALGDLVESIVGAILIDTNLNLDKVWRIVEPLLSPIVTP
DKLELPPFRELNELCDSLGYFIKEKCKNKGEVVHAELLLQLDHDLLVGEGFDRSRKVAKG
KAASCLLKDLENRGISRKKRKHDCVDSSQTMEDDSLEPTIPKRQRSAEIQLLDESKKACS
ATPATPVIVTVKTKKGGPRTTLFELCKKLLWPMPSIKATEHKSSAPMEIGEGPERKKGFI
SFVSKIILNVPGYDIIECTGDAKADKKSSSDSAALFMLYELEQRGKLIIEETL
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgctgaagtcccattcaacaccccaattttctccggttatcttaaccaaacta
atcgaggaacagggtgagcctctaaaacgaagtttcagtgaggcgaactcagacccacct
gattggatggttctagacgacaatgaaactgctaaggaagaagacccttcttcatcttca
aaacctaaggactttaaccccagagggtatcaattgcaggtatatgaggtggcaaaggga
agaaacataatagcagtgttggatacaggtgtagggaagacaatgatagctgtgatgctc
ataaaagattttgttcaagctatcgagtctactgaaagtaaaaaattgattattttcttg
gctcccactgttcatctagtcaatcagcaatttgaatatgtaaaagatcatactagtttg
gaagttgaacagtattatggagctaagggggttgatgaatggaccttggattgttgggag
aaagaaacaaaggagcatgatgttctggttatgacaccccaaattctattggatgcctta
aggaaggcattcttgagtctggagatggtgtccttaatgataatagacgagtgccaccgt
gctactggcaaccatccatatgccaaaataatgaaggaattttatcacaaatctaataac
aagccaaagatttttggaatgacagcatcacctgtggttagcaaaggtgtgttgtccagc
aataattgcgatggtcaaatgtcagaacttgaatgtgttttggattccttgatatacact
attgaagacaggacagagatggaagcgtgtgttccttctgctaaagaaagttgtagattt
tttgatccagcacaattttctagcttggatttgaaagcaaaggtagaagcctcttggtta
aagacagatgcgtcattgtcaaatttgcaaagctcactgcaaacttcttataaaggcatg
gatgataaacttaagaatctacggaagcgattatcaaatgaccatgctaaggttctgcat
tgccttgataatcttggtctcatatgtgcttatgaggctgttaacatttgtctagagaac
atccttgacaccacagaggaatctaaagcatatagagaaagtgtgttgcagtataaaaat
ttccttgaggaagtccaatgtagaattggggagtctcttcccctcggtgataaaaatttt
ctgaatactggatttgactatttgaaggcagtagatcttggctatatttctccaaaactg
catgaactacttcaactgttccaatcatttggagaaactagacaagtattgtgcctgatt
tttgttgaaagaattattactgctaaagtaattgaaagatttgcgaagaaagtaagctgt
ttatcacatttcatggtttcatatatgactggaagtaatacatctgttgattccctggca
ccaaaaatgcaaaaggaaaccttggagtcatttcgatctgggaaggtgaatctattgttt
actactgatgtggttgaggagggaattcatgtaccaaattgctgttatgtgatacgtttc
gacctgccaaagacagtccggagttatgtacaatctcgaggaagagctaggcagaacaat
tctgaattcattatgatgcttgagaggggaaatgtgaaacaaagaaatcaactatatgat
ataatcaggagtgagtattcaatgacaaattcggcaattaaaagagatcccgattctgat
ccatgccttcttaaagatcatacatttgaagaaacaaatgtttttattgtggatgctact
ggagcttcagttactgcagattctgctgttagcctcatccataaatattgtgggaagctc
cccggtgataagtattacacaccaaaaccaaatttccagttcacgtcttctgaaggatta
tataagtgtaaattaacattacctgttaatgcagccgttcaaacaatagttggtccactg
tctaggaattctcatttagcaaagcagcttgtatgcttagaagcatgtaagcagcttcat
caaatgggtgccttggatgatcatctcactccatccattgaagagccttcagaaaatgct
tgtatttctaaaggaaaagattcaggtgcaggtgcaggaactacaaaacggaaggagctt
catggaacaacttgcatacaggcattatgtggaagctggggagaaaaatctgatgatgct
gttttctttgcctataaatttgacttcaaatgcaatatcattactgtggtttattctgga
tttgttcttctaattgaatcaaagcttgcggatgatgtggggaatactgaaatggatctt
ttcttgattggtaagatggttaaggctagcgtttcttcctgtgggcaagtgtatttgaat
gcagaacagatggtgaaagcgaagcgctttcaggaatttttctttaatggcttgtttggg
aagttatttgttggatctaaatcatctggagcaccaagagaatttctacttcgggataaa
acaagctccttgtggagtccatcccacatgtatttgcttttgcccctcgaggataattca
actgatgaattgagaatacactggccagggataacagcttgcacattagctgcggaattt
ttaaataaaaattctttgttgggcactgagcaatctgatgatgatggaagcaatccatca
ttgaacagtactggttcacctgtgacatactgcaaagaaaccaatataatccgctttgct
aacagttcagttgatgctaatagtcttagaaatacggtagtattggctattcacactgga
agaatctactgcatcattgaagctgtgagtgataaaactgctgaaagttctttcgctgaa
actgttgatacggtctcatcagagtttgctaccttctatgaatacttctacaaaaagtac
aatattgtgctgaaacatccaggacagcctttgatgctgttaaagcagagccataacccg
cacaacttgcttgtgaattttaatgatgaaggtgtatcagctaaggcatcacaagctggc
gtggttaatgaaaagcctcggtttcatgtccacatgccccctgagcttttacttgtcctt
gatgtcccagtgagtgttctaaaatcattgtacttactgccatcattgatgcatcggctg
gagtccttaatgttggccaaccaactcagagaagagataaacttttgttctagcaacatt
gatattccaagctcaatgatcctggaagcattaacaacacttagatgctgtgaaagtttt
tcaatggaaaggctggaattgcttggggattcagttctgaagtatgctgttagctgccac
ctctttcttagatatcccaacaaacatgagggacaattatctgccaggcgttcgttggca
gtttgtaattcaaccctgcataagttgggaactgaccacaaaatacagggatacattagg
gacagtgcttttgatccccgtcgttgggtagctccaggacaacgagtgcttcgccctgtt
ccttgcaagtgtggtgtggactctctagaagttcctttagataaaaaatttcagacagaa
gaccctaaagttaaggttggtaaatcctgtgatagaggccaccgatggttgtgttcaaaa
accatatcagattgtgttgaagctctcataggagcatactacttaagtggtggacttgtt
gctgcccttcatgtgatgaagtggctcgggattgatgccgaacttgatcccttggtggta
gctgaggtcattaatcaggcatccttaagaacttatgtccccaattacgaaatccacatg
atagagtcaaaagttggctacaatttttctgtcaagtttttcttgcaggaggcattgaca
catgaatctttgcacgagtcctactgttaccagagacttgaatttcttggtgattctgtg
ttggacttgctgatcacccagtatctctacaaccatcacactgatatagatccgggtgag
ttgactgacctgcgctccgcttcggttaataatgaaaattttgctcaagttgccgtgcgc
catgaccttcataagcatcttcaacattgttcaactttactatcaaaccaaataagtgaa
tatgtgcggtccttcactgaatctgataacaccaccagattagatcccagcataaaaggt
cccaaggctcttggagacctggttgaaagtattgttggggcaattctgattgatacaaac
ctgaatcttgacaaagtctggagaattgttgaaccgttgttgtctccaattgtaacccca
gataagcttgagctgcctccattccgggaactgaatgaattatgcgactctcttggatat
tttattaaggaaaaatgtaaaaataagggggaagtagtgcacgccgagcttctattgcag
ctagatcatgatttgttggtaggagaggggtttgatagaagtagaaaagtagcaaaagga
aaagccgcttcttgtctgttgaaggaccttgagaacagaggaatctccaggaagaaaagg
aaacatgactgtgtggattcaagtcaaaccatggaagatgactcgttagaaccaacaatc
cctaagaggcaaaggagcgccgaaattcagttgcttgatgaatcaaagaaagcatgcagt
gctacgcctgccaccccagttattgtaacagtaaaaacgaagaaaggagggccgaggacc
actctttttgagctttgcaagaaactgctgtggcctatgcctagtatcaaagcaacagaa
cacaaatcaagtgctcccatggaaattggtgaaggtcccgagaggaaaaaagggtttatc
agctttgtgtcgaaaatcatcttgaatgtcccaggatacgacattattgaatgcactgga
gatgcaaaagctgacaaaaaaagttcttcagactcagcagcactgtttatgctttatgag
cttgaacagcgtgggaagctcatcatcgaggaaaccttataa
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